Genetic diversity, variation and recombination among the human papillomaviruses (HPVs) genomes isolated in China: a comparative genomic and phylogenetic analysis
文献类型：期刊论文
| 作者 | Shah, Pir Tariq1,2; Wu, Zhenyong1,3; Ma, Ruilan4; Wu, Chengjun2 |
| 刊名 | PATHOGENS AND GLOBAL HEALTH
 |
| 出版日期 | 2024-09-11 |
| 页码 | 14 |
| 关键词 | Human papillomaviruses genetic variation recombination geographic diversity China |
| ISSN号 | 2047-7724 |
| DOI | 10.1080/20477724.2024.2401273 |
| 通讯作者 | Ma, Ruilan(maruilan2000@163.com) ; Wu, Chengjun(wcj5532@dlut.edu.cn) |
| 英文摘要 | Human papillomaviruses (HPVs) are widespread, sexually transmitted group of viruses that infect most individuals at some stage, causing genital warts and cancers. They are members of the Papillomaviridae family, which contains about 400 HPV types. China is among the high HPV burden countries with reported infections of multiple HPV types, accounting for 17.3% of global deaths and 18.2% of global new cases. Thus, understanding the genetic variation and geographic diversity characteristics of HPVs isolated in China is critical for global HPV prevention strategies. Thus, we analyzed the available HPV genome sequences isolated in China that grouped into two categories (alpha- and gamma-papillomaviruses) based on full-length genomes. The most common were HPV-16, -6, -58, and -52 respectively. In addition, four of the novel strains isolated in China, e.g. TG550, JDFY01, CH2, and L55 clustered with the HPV-mSK 159, 244, 201, and 200 respectively. Our phylogeographic network analysis indicated that the L55, TG550, and CH2 are genetically identical to the mSK 200, 046, and 201 respectively, while JDFY01 appeared separately, connected to the mSK-040 following five mutational steps. Also, we found ten recombination events among HPV-6/11 types within their E1, E2, E7, L1/L2 proteins, and Long Control Region ORFs. We achieved the consensus amino acid sequences of HPV proteins and found a conserved stretch of amino acids within E5A of all HPVs circulating in China. These findings offer valued insights into the genetic relationships, distribution, and evolution of the HPVs in China that may assist in adapting effective HPV preventive measures. |
| WOS关键词 | PROTEIN ; INFECTION ; HEAD |
| 资助项目 | National Natural Science Foundation of China[82072287] |
| WOS研究方向 | Public, Environmental & Occupational Health ; Parasitology ; Tropical Medicine |
| 语种 | 英语 |
| WOS记录号 | WOS:001310445100001 |
| 出版者 | TAYLOR & FRANCIS LTD |
| 源URL | [http://119.78.100.183/handle/2S10ELR8/314351]  |
| 专题 | 中国科学院上海药物研究所 |
| 通讯作者 | Ma, Ruilan; Wu, Chengjun |
| 作者单位 | 1.Bohai Rim Adv Res Inst Drug Discovery, Shandong Lab Yantai Drug Discovery, Yantai, Peoples R China 2.Dalian Univ Technol, Fac Med, Sch Basic Med Sci, .2 Linggong Rd, Dalian 116024, Peoples R China 3.Chinese Acad Sci, Shanghai Inst Mat Med, Shanghai, Peoples R China 4.Dalian Med Univ, Radiotherapy Oncol Dept, Affiliated Hosp 2, 67 Zhongshan Rd, Dalian 116024, Liaoning, Peoples R China |
| 推荐引用方式 GB/T 7714 | Shah, Pir Tariq,Wu, Zhenyong,Ma, Ruilan,et al. Genetic diversity, variation and recombination among the human papillomaviruses (HPVs) genomes isolated in China: a comparative genomic and phylogenetic analysis[J]. PATHOGENS AND GLOBAL HEALTH,2024:14. |
| APA | Shah, Pir Tariq,Wu, Zhenyong,Ma, Ruilan,&Wu, Chengjun.(2024).Genetic diversity, variation and recombination among the human papillomaviruses (HPVs) genomes isolated in China: a comparative genomic and phylogenetic analysis.PATHOGENS AND GLOBAL HEALTH,14. |
| MLA | Shah, Pir Tariq,et al."Genetic diversity, variation and recombination among the human papillomaviruses (HPVs) genomes isolated in China: a comparative genomic and phylogenetic analysis".PATHOGENS AND GLOBAL HEALTH (2024):14. |
入库方式： OAI收割
来源：上海药物研究所
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