Remarkable phylogenetic resolution of the most complex clade of Cyprinidae (Teleostei: Cypriniformes): A proof of concept of homology assessment and partitioning sequence data integrated with mixed model Bayesian analyses
文献类型：期刊论文
| 作者 | Tao, Wenjing1,2; Mayden, Richard L.3; He, Shunping1 |
| 刊名 | MOLECULAR PHYLOGENETICS AND EVOLUTION
 |
| 出版日期 | 2013-03-01 |
| 卷号 | 66期号:3页码:603-616 |
| 关键词 | Cyprinidae Nuclear genes Phylogeny Mixed model Bayesian analyses |
| ISSN号 | 1055-7903 |
| 通讯作者 | Mayden, RL (reprint author), St Louis Univ, Dept Biol, 3507 Laclede Ave, St Louis, MO 63103 USA. |
| 中文摘要 | Despite many efforts to resolve evolutionary relationships among major clades of Cyprinidae, some nodes have been especially problematic and remain unresolved. In this study, we employ four nuclear gene fragments (3.3 kb) to infer interrelationships of the Cyprinidae. A reconstruction of the phylogenetic relationships within the family using maximum parsimony, maximum likelihood, and Bayesian analyses is presented. Among the taxa within the monophyletic Cyprinidae, Rasborinae is the basal-most lineage; Cyprinine is sister to Leuciscine. The monophyly for the subfamilies Gobioninae, Leuciscinae and Acheilognathinae were resolved with high nodal support. Although our results do not completely resolve relationships within Cyprinidae, this study presents novel and significant findings having major implications for a highly diverse and enigmatic clade of East-Asian cyprinids. Within this monophyletic group five closely-related subgroups are identified. Tinca tinca, one of the most phylogenetically enigmatic genera in the family, is strongly supported as having evolutionary affinities with this East-Asian clade; an established yet remarkable association because of the natural variation in phenotypes and generalized ecological niches occupied by these taxa. Our results clearly argue that the choice of partitioning strategies has significant impacts on the phylogenetic reconstructions, especially when multiple genes are being considered. The most highly partitioned model (partitioned by codon positions within genes) extracts the strongest phylogenetic signals and performs better than any other partitioning schemes supported by the strongest 2 Delta ln Bayes factor. Future studies should include higher levels of taxon sampling and partitioned, model-based analyses. (C) 2012 Elsevier Inc. All rights reserved. |
| 英文摘要 | Despite many efforts to resolve evolutionary relationships among major clades of Cyprinidae, some nodes have been especially problematic and remain unresolved. In this study, we employ four nuclear gene fragments (3.3 kb) to infer interrelationships of the Cyprinidae. |
| WOS标题词 | Science & Technology ; Life Sciences & Biomedicine |
| 类目[WOS] | Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity |
| 研究领域[WOS] | Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity |
| 关键词[WOS] | SITE RATE VARIATION ; RAY-FINNED FISHES ; EUROPEAN CYPRINIDS ; POSTERIOR PROBABILITIES ; MOLECULAR SYSTEMATICS ; MULTIGENE PHYLOGENY ; LIKELIHOOD ANALYSIS ; CONTROL REGION ; NUCLEAR LOCI ; MITOCHONDRIAL |
| 收录类别 | SCI |
| 资助信息 | National Basic Research Program of China (973 Program) [2010CB126302]; National Natural Science Foundation of China [31090254, U1036603]; Chinese Academy of Sciences [KSCX2-EW-Q-12]; USA NSF EF [0431326, DEB-1021840, DBI-0956370] |
| 语种 | 英语 |
| WOS记录号 | WOS:000315553400003 |
| 公开日期 | 2013-10-31 |
| 源URL | [http://ir.ihb.ac.cn/handle/342005/19264]  |
| 专题 | 水生生物研究所_水生生物多样性与资源保护研究中心_期刊论文 |
| 作者单位 | 1.Chinese Acad Sci, Inst Hydrobiol, Key Lab Aquat Biodivers & Conservat, Wuhan 430072, Peoples R China 2.Chinese Acad Sci, Grad Univ, Beijing 100039, Peoples R China 3.St Louis Univ, Dept Biol, St Louis, MO 63103 USA |
| 推荐引用方式 GB/T 7714 | Tao, Wenjing,Mayden, Richard L.,He, Shunping. Remarkable phylogenetic resolution of the most complex clade of Cyprinidae (Teleostei: Cypriniformes): A proof of concept of homology assessment and partitioning sequence data integrated with mixed model Bayesian analyses[J]. MOLECULAR PHYLOGENETICS AND EVOLUTION,2013,66(3):603-616. |
| APA | Tao, Wenjing,Mayden, Richard L.,&He, Shunping.(2013).Remarkable phylogenetic resolution of the most complex clade of Cyprinidae (Teleostei: Cypriniformes): A proof of concept of homology assessment and partitioning sequence data integrated with mixed model Bayesian analyses.MOLECULAR PHYLOGENETICS AND EVOLUTION,66(3),603-616. |
| MLA | Tao, Wenjing,et al."Remarkable phylogenetic resolution of the most complex clade of Cyprinidae (Teleostei: Cypriniformes): A proof of concept of homology assessment and partitioning sequence data integrated with mixed model Bayesian analyses".MOLECULAR PHYLOGENETICS AND EVOLUTION 66.3(2013):603-616. |
入库方式： OAI收割
来源：水生生物研究所
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