New molecular resources of Loimia borealis (Annelida, Terebellidae) based on genome-skimming and RNA-seq approaches, with insights into monophyly of the genus
文献类型：期刊论文
| 作者 | Zeng, Sheng2; Yang, Deyuan2; He, Caifang3; Sun, Yanan4; Glasby, Christopher J.1,5; Zhang, Yanjie3 |
| 刊名 | ZOOSYSTEMATICS AND EVOLUTION
 |
| 出版日期 | 2025-09-19 |
| 卷号 | 101期号:4页码:1815-1830 |
| 关键词 | Genome skimming histone genes Loimia mitogenome nuclear genes pipeline polychaete Terebellida |
| ISSN号 | 1860-0743 |
| DOI | 10.3897/zse.101.161344 |
| 通讯作者 | Zeng, Sheng(33120231152326@stu.xmu.edu.cn) ; Yang, Deyuan(deyuanyang92@163.com) ; Glasby, Christopher J.(glasby93@gmail.com) ; Zhang, Yanjie(yanjiezhang@hainanu.edu.cn) |
| 英文摘要 | The terebellid Loimia borealis Wang, Sui, Kou & Li, 2020 was first described from Shouguang, China, and its molecular data, consisting of partial mitochondrial genes (cox1 and 16S) and a partial nuclear gene (18S), were reported. In this study, small-sized specimens of L. borealis were collected near the type location, and the species' morphological description is supplemented. Several commonly used genetic sequences, including the complete mitochondrial genome, complete nuclear high-copy genes (18S-ITS1-5.8S-ITS2-28S), and histone genes (H3, H4, H2B, and H2A), are also provided. Additionally, the transcriptome of L. borealis is assembled from data generated by RNA-seq. A Benchmarking Universal Single-Copy Orthologs (BUSCO) assessment showed high completeness of the transcriptome, with 97.5% (655/672) of the metazoan conserved orthologous genes. We provide an easier pipeline to facilitate the mining of molecular markers from genome-skimming sequencing data. The monophyly of Loimia is supported when combined with partial mitochondrial gene markers (cox1 and 16S) and partial nuclear genes (18S, 28S, and H3), but not by individual genes. The nodes in the phylogenetic trees based on 13 protein-coding genes (13 PCGs) and 2 mitochondrial rRNA genes were well supported, with most showing maximum bootstrap support and posterior probability. The current classification of Terebelliformia and Cirratuliformia is also supported. |
| WOS关键词 | PHYLOGENETIC-RELATIONSHIPS ; POLYCHAETA ; PROGRAM ; GENES ; REEF |
| 资助项目 | Shandong Provincial Natural Science Foundation[2023HWYQ-101] ; Taishan Scholars Program[tsqn:202306288] ; National Natural Science Foundation of China[42306132] |
| WOS研究方向 | Zoology |
| 语种 | 英语 |
| WOS记录号 | WOS:001616634200001 |
| 出版者 | PENSOFT PUBLISHERS |
| 源URL | [http://ir.qdio.ac.cn/handle/337002/203770]  |
| 专题 | 海洋研究所_海洋生物分类与系统演化实验室 |
| 通讯作者 | Zeng, Sheng; Yang, Deyuan; Glasby, Christopher J.; Zhang, Yanjie |
| 作者单位 | 1.Australian Museum Res Inst, 1 William St, Darlinghurst, NSW 2010, Australia 2.Xiamen Univ, Coll Environm & Ecol, Xiamen 361102, Peoples R China 3.Hainan Univ, Sch Life & Hlth Sci, Haikou 570228, Peoples R China 4.Chinese Acad Sci, Inst Oceanol, Lab Marine Organism Taxon & Phylogeny, Qingdao Key Lab Marine Biodivers & Conservat, Qingdao 26000, Peoples R China 5.Museum & Art Gallery Northern Terr, Nat Sci, POB 4646, Darwin, NT 0801, Australia |
| 推荐引用方式 GB/T 7714 | Zeng, Sheng,Yang, Deyuan,He, Caifang,et al. New molecular resources of Loimia borealis (Annelida, Terebellidae) based on genome-skimming and RNA-seq approaches, with insights into monophyly of the genus[J]. ZOOSYSTEMATICS AND EVOLUTION,2025,101(4):1815-1830. |
| APA | Zeng, Sheng,Yang, Deyuan,He, Caifang,Sun, Yanan,Glasby, Christopher J.,&Zhang, Yanjie.(2025).New molecular resources of Loimia borealis (Annelida, Terebellidae) based on genome-skimming and RNA-seq approaches, with insights into monophyly of the genus.ZOOSYSTEMATICS AND EVOLUTION,101(4),1815-1830. |
| MLA | Zeng, Sheng,et al."New molecular resources of Loimia borealis (Annelida, Terebellidae) based on genome-skimming and RNA-seq approaches, with insights into monophyly of the genus".ZOOSYSTEMATICS AND EVOLUTION 101.4(2025):1815-1830. |
入库方式： OAI收割
来源：海洋研究所
浏览0
下载0
收藏0
其他版本
除非特别说明，本系统中所有内容都受版权保护，并保留所有权利。