Transcriptome Sequences Resolve Deep Relationships of the Grape Family
文献类型：期刊论文
| 作者 | Wen, Jun1; Xiong, Zhiqiang2; Nie, Ze-Long3; Mao, Likai2; Zhu, Yabing2; Kan, Xian-Zhao4; Ickert-Bond, Stefanie M.5,6; Gerrath, Jean7; Zimmer, Elizabeth A.1; Fang, Xiao-Dong2 |
| 刊名 | PLOS ONE
 |
| 出版日期 | 2013-09-17 |
| 卷号 | 8期号:9页码:e74394 |
| 关键词 | DISPERSAL-VICARIANCE ANALYSIS NUCLEAR GENE DATA RNA-SEQ DATA PHYLOGENETIC ANALYSIS MOLECULAR PHYLOGENY MAXIMUM-LIKELIHOOD ANGIOSPERM DIVERSIFICATION PARTHENOCISSUS VITACEAE SEED MORPHOLOGY EVOLUTION |
| ISSN号 | 1932-6203 |
| 通讯作者 | Wen, J (reprint author), Smithsonian Inst, Dept Bot, Natl Museum Nat Hist, MRC166, Washington, DC 20560 USA.,wenj@si.edu ; fangxd@genomics.org.cn |
| 英文摘要 | Previous phylogenetic studies of the grape family (Vitaceae) yielded poorly resolved deep relationships, thus impeding our understanding of the evolution of the family. Next-generation sequencing now offers access to protein coding sequences very easily, quickly and cost-effectively. To improve upon earlier work, we extracted 417 orthologous single-copy nuclear genes from the transcriptomes of 15 species of the Vitaceae, covering its phylogenetic diversity. The resulting transcriptome phylogeny provides robust support for the deep relationships, showing the phylogenetic utility of transcriptome data for plants over a time scale at least since the mid-Cretaceous. The pros and cons of transcriptome data for phylogenetic inference in plants are also evaluated. |
| WOS标题词 | Science & Technology |
| 学科主题 | Multidisciplinary Sciences |
| 类目[WOS] | Multidisciplinary Sciences |
| 研究领域[WOS] | Science & Technology - Other Topics |
| 关键词[WOS] | DISPERSAL-VICARIANCE ANALYSIS ; NUCLEAR GENE DATA ; RNA-SEQ DATA ; PHYLOGENETIC ANALYSIS ; MOLECULAR PHYLOGENY ; MAXIMUM-LIKELIHOOD ; ANGIOSPERM DIVERSIFICATION ; PARTHENOCISSUS VITACEAE ; SEED MORPHOLOGY ; EVOLUTION |
| 收录类别 | SCI |
| 资助信息 | Office of the Smithsonian Undersecretary of Science; US National Science Foundation [DEB 0743474, DEB 0743499]; National Museum of Natural History of the Smithsonian Institution; trust funds |
| 语种 | 英语 |
| WOS记录号 | WOS:000324547300039 |
| 公开日期 | 2013-11-12 |
| 源URL | [http://ir.kib.ac.cn/handle/151853/17304]  |
| 专题 | 昆明植物研究所_中国科学院东亚植物多样性与生物地理学重点实验室 |
| 作者单位 | 1.Smithsonian Inst, Dept Bot, Natl Museum Nat Hist, MRC166, Washington, DC 20560 USA 2.BGI Shenzhen, Shenzhen, Peoples R China 3.Chinese Acad Sci, Kunming Inst Bot, Key Lab Biodivers & Biogeog, Kunming, Yunnan, Peoples R China 4.Anhui Normal Univ, Coll Life Sci, Wuhu, Anhui, Peoples R China 5.Univ Alaska Fairbanks, UA Museum North Herbarium, Fairbanks, AK USA 6.Univ Alaska Fairbanks, Dept Biol & Wildlife, Fairbanks, AK USA 7.Univ No Iowa, Dept Biol, Cedar Falls, IA 50614 USA |
| 推荐引用方式 GB/T 7714 | Wen, Jun,Xiong, Zhiqiang,Nie, Ze-Long,et al. Transcriptome Sequences Resolve Deep Relationships of the Grape Family[J]. PLOS ONE,2013,8(9):e74394. |
| APA | Wen, Jun.,Xiong, Zhiqiang.,Nie, Ze-Long.,Mao, Likai.,Zhu, Yabing.,...&Fang, Xiao-Dong.(2013).Transcriptome Sequences Resolve Deep Relationships of the Grape Family.PLOS ONE,8(9),e74394. |
| MLA | Wen, Jun,et al."Transcriptome Sequences Resolve Deep Relationships of the Grape Family".PLOS ONE 8.9(2013):e74394. |
入库方式： OAI收割
来源：昆明植物研究所
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