While the late Llandovery brachiopod faunas of South China are well documented, they are known almost exclusively from shallow-water settings. Here, we present a detailed study of a brachiopod fauna from the Ningqiang Formation (early to middle Telychian) at the Bifengguan section in Sichuan Province, South China. Quantitative analyses, including non-metric multidimensional scaling (NMDS) and network analysis, reveal three successive brachiopod associations. Significantly, the basal Aegiria-Epitomyonia association was characterized by the abundance of the deep-water indicator Epitomyonia. This represents the first definitive record of a deep-water (BA4) community within the Telychian Xiushan Fauna, which was previously thought to be restricted to shallower environments. This basal association is succeeded by the Aegiria-Megaspinochonetes and Fardenia-Striispirifer associations, and this complete succession indicates a shallowing-upward environmental trend from a BA4 to an upper BA3 setting. We interpret this shallowing trend as a response to regional uplift. The initial existence of this deep-water association was likely facilitated by the unique paleogeographical position of the locality, which likely provided a stable habitat for this deep-water community. This study expands the known ecological range of the Xiushan Fauna and underscores the critical role of local paleogeography in shaping benthic community structures during the early Silurian.