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Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes
文献类型：期刊论文
| 作者 | Wang, Jianjun1,2; Shen, Ji1; Wu, Yucheng3; Tu, Chen4 ; Soininen, Janne5; Stegen, James C.6; He, Jizheng2; Liu, Xingqi1; Zhang, Lu1; Zhang, Enlou1
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| 刊名 | ISME JOURNAL
 |
| 出版日期 | 2013-07-01 |
| 卷号 | 7期号:7页码:1310-1321 |
| 关键词 | bacteria community composition distance-decay relationship evolutionary niche conservatism neutral theory phylogenetic beta diversity |
| ISSN号 | 1751-7362 |
| 其他题名 | Responses of Mytilus galloprovincialis to bacterial challenges by metabolomics and proteomics.pdf |
| 产权排序 | [Wang, Jianjun; Shen, Ji; Liu, Xingqi; Zhang, Lu; Zhang, Enlou] Chinese Acad Sci, Nanjing Inst Geog & Limnol, State Key Lab Lake Sci & Environm, Nanjing 210008, Jiangsu, Peoples R China; [Wang, Jianjun; He, Jizheng] Chinese Acad Sci, Res Ctr Ecoenvironm Sci, State Key Lab Urban & Reg Ecol, Beijing, Peoples R China; [Wu, Yucheng] Chinese Acad Sci, Inst Soil Sci, State Key Lab Soil & Sustainable Agr, Nanjing, Peoples R China; [Tu, Chen] Chinese Acad Sci, Yantai Inst Coastal Zone Res, Key Lab Coastal Zone Environm Proc, Yantai, Peoples R China; [Soininen, Janne] Univ Helsinki, Dept Geosci & Geog, Helsinki, Finland; [Stegen, James C.] Pacific Northwest Natl Lab, Div Biol Sci, Fundamental & Computat Sci Directorate, Richland, WA USA |
| 通讯作者 | Wang, JJ (reprint author), Chinese Acad Sci, Nanjing Inst Geog & Limnol, State Key Lab Lake Sci & Environm, 73 East Beijing Rd, Nanjing 210008, Jiangsu, Peoples R China. JJWang@niglas.ac.cn |
| 中文摘要 | Increasing evidence has emerged for non-random spatial distributions of microbes, but knowledge of the processes that cause variation in microbial assemblage among ecosystems is lacking. For instance, some studies showed that deterministic processes such as habitat specialization are important, while other studies hold that bacterial communities are assembled by stochastic forces. Here we examine the relative influence of deterministic and stochastic processes for bacterial communities from subsurface environments, stream biofilm, lake water, lake sediment and soil using pyrosequencing of the 16S ribosomal RNA gene. We show that there is a general pattern in phylogenetic signal in species ecological niches across recent evolutionary time for all studied habitats, enabling us to infer the influences of community assembly processes from patterns of phylogenetic turnover in community composition. The phylogenetic dissimilarities among-habitat types were significantly higher than within them, and the communities were clustered according to their original habitat types. For communities within-habitat types, the highest phylogenetic turnover rate through space was observed in subsurface environments, followed by stream biofilm on mountainsides, whereas the sediment assemblages across regional scales showed the lowest turnover rate. Quantifying phylogenetic turnover as the deviation from a null expectation suggested that measured environmental variables imposed strong selection on bacterial communities for nearly all sample groups. For three sample groups, spatial distance reflected unmeasured environmental variables that impose selection, as opposed to spatial isolation. Such characterization of spatial and environmental variables proved essential for proper interpretation of partial Mantel results based on observed beta diversity metrics. In summary, our results clearly indicate a dominant role of deterministic processes on bacterial assemblages and highlight that bacteria show strong habitat associations that have likely emerged through evolutionary adaptation. |
| 英文摘要 | Increasing evidence has emerged for non-random spatial distributions of microbes, but knowledge of the processes that cause variation in microbial assemblage among ecosystems is lacking. For instance, some studies showed that deterministic processes such as habitat specialization are important, while other studies hold that bacterial communities are assembled by stochastic forces. Here we examine the relative influence of deterministic and stochastic processes for bacterial communities from subsurface environments, stream biofilm, lake water, lake sediment and soil using pyrosequencing of the 16S ribosomal RNA gene. We show that there is a general pattern in phylogenetic signal in species ecological niches across recent evolutionary time for all studied habitats, enabling us to infer the influences of community assembly processes from patterns of phylogenetic turnover in community composition. The phylogenetic dissimilarities among-habitat types were significantly higher than within them, and the communities were clustered according to their original habitat types. For communities within-habitat types, the highest phylogenetic turnover rate through space was observed in subsurface environments, followed by stream biofilm on mountainsides, whereas the sediment assemblages across regional scales showed the lowest turnover rate. Quantifying phylogenetic turnover as the deviation from a null expectation suggested that measured environmental variables imposed strong selection on bacterial communities for nearly all sample groups. For three sample groups, spatial distance reflected unmeasured environmental variables that impose selection, as opposed to spatial isolation. Such characterization of spatial and environmental variables proved essential for proper interpretation of partial Mantel results based on observed beta diversity metrics. In summary, our results clearly indicate a dominant role of deterministic processes on bacterial assemblages and highlight that bacteria show strong habitat associations that have likely emerged through evolutionary adaptation. |
| 学科主题 | Ecology ; Microbiology |
| 研究领域[WOS] | Environmental Sciences & Ecology ; Microbiology |
| 关键词[WOS] | COMMUNITY ECOLOGY ; MICROBIAL COMMUNITIES ; NICHE CONSERVATISM ; GLOBAL PATTERNS ; BIOGEOGRAPHY ; MICROORGANISMS ; SUBSURFACE ; SIMILARITY ; FRAMEWORK ; DYNAMICS |
| 收录类别 | SCI |
| 资助信息 | 973 Program [2012CB956100]; key project of NSFC [41030211]; NIGLAS [NIGLAS2012135004]; NSFC [40903031, 41273088, 41271468]; Jiangsu NSF [BK2010605]; CPSF [2011M500397]; CAS oversea visiting scholarship [2011-115]; Youth Innovation Promotion Association, CAS; Linus Pauling Distinguished Postdoctoral Fellowship at PNNL |
| 原文出处 | http://dx.doi.org/10.1038/ismej.2013.30 |
| 语种 | 英语 |
| WOS记录号 | WOS:000320852100007 |
| 公开日期 | 2014-07-08 |
| 源URL | [http://ir.yic.ac.cn/handle/133337/6981]  |
| 专题 | 烟台海岸带研究所_中科院海岸带环境过程与生态修复重点实验室 烟台海岸带研究所_中科院烟台海岸带研究所知识产出 |
| 作者单位 | 1.Chinese Acad Sci, Nanjing Inst Geog & Limnol, State Key Lab Lake Sci & Environm, Nanjing 210008, Jiangsu, Peoples R China 2.Chinese Acad Sci, Res Ctr Ecoenvironm Sci, State Key Lab Urban & Reg Ecol, Beijing, Peoples R China 3.Chinese Acad Sci, Inst Soil Sci, State Key Lab Soil & Sustainable Agr, Nanjing, Peoples R China 4.Chinese Acad Sci, Yantai Inst Coastal Zone Res, Key Lab Coastal Zone Environm Proc, Yantai, Peoples R China 5.Univ Helsinki, Dept Geosci & Geog, Helsinki, Finland 6.Pacific Northwest Natl Lab, Div Biol Sci, Fundamental & Computat Sci Directorate, Richland, WA USA |
| 推荐引用方式 GB/T 7714 | Wang, Jianjun,Shen, Ji,Wu, Yucheng,et al. Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes[J]. ISME JOURNAL,2013,7(7):1310-1321. |
| APA | Wang, Jianjun.,Shen, Ji.,Wu, Yucheng.,Tu, Chen.,Soininen, Janne.,...&Zhang, Enlou.(2013).Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes.ISME JOURNAL,7(7),1310-1321. |
| MLA | Wang, Jianjun,et al."Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes".ISME JOURNAL 7.7(2013):1310-1321. |
入库方式： OAI收割
来源：烟台海岸带研究所
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