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Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi
文献类型：期刊论文
| 作者 | Schoch, Conrad L.1; Robbertse, Barbara1; Robert, Vincent2; Duong Vu2; Cardinali, Gianluigi3; Irinyi, Laszlo4; Meyer, Wieland4; Nilsson, R. Henrik5; Hughes, Karen6; Miller, Andrew N.7 |
| 刊名 | DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION
 |
| 出版日期 | 2014-06-30 |
| 页码 | bau061 |
| ISSN号 | 1758-0463 |
| 关键词 | INTERNAL TRANSCRIBED SPACER ARBUSCULAR MYCORRHIZAL FUNGI RIBOSOMAL DNA INTERSPECIFIC HYBRIDIZATION SEQUENCE ANALYSES SPECIES COMPLEX IDENTIFICATION EVOLUTION BARCODE LIFE |
| 通讯作者 | Yang, YP (reprint author), Chinese Acad Sci, Kunming Inst Bot, Key Lab Plant Div & Biogeog East Asia, Menglun Township 650201, Yunnan, Peoples R China. ; yangyp@mail.kib.ac.cn |
| 产权排序 | 第一 |
| 英文摘要 | DNA phylogenetic comparisons have shown that morphology-based species recognition often underestimates fungal diversity. Therefore, the need for accurate DNA sequence data, tied to both correct taxonomic names and clearly annotated specimen data, has never been greater. Furthermore, the growing number of molecular ecology and microbiome projects using high-throughput sequencing require fast and effective methods for en masse species assignments. In this article, we focus on selecting and re-annotating a set of marker reference sequences that represent each currently accepted order of Fungi. The particular focus is on sequences from the internal transcribed spacer region in the nuclear ribosomal cistron, derived from type specimens and/or ex-type cultures. Re-annotated and verified sequences were deposited in a curated public database at the National Center for Biotechnology Information (NCBI), namely the RefSeq Targeted Loci (RTL) database, and will be visible during routine sequence similarity searches with NR_prefixed accession numbers. A set of standards and protocols is proposed to improve the data quality of new sequences, and we suggest how type and other reference sequences can be used to improve identification of Fungi. |
| 学科主题 | Mathematical & Computational Biology |
| 类目[WOS] | Mathematical & Computational Biology |
| 研究领域[WOS] | Mathematical & Computational Biology |
| 关键词[WOS] | INTERNAL TRANSCRIBED SPACER ; ARBUSCULAR MYCORRHIZAL FUNGI ; RIBOSOMAL DNA ; INTERSPECIFIC HYBRIDIZATION ; SEQUENCE ANALYSES ; SPECIES COMPLEX ; IDENTIFICATION ; EVOLUTION ; BARCODE ; LIFE |
| 资助信息 | National Center for Biotechnology Information, National Library of Medicine at the National Institutes of Health; National Human Genome Research Institute at the National Institutes of Health |
| 收录类别 | SCI |
| 语种 | 英语 |
| WOS记录号 | WOS:000338579600001 |
| 公开日期 | 2014-10-11 |
| 源URL | [http://ir.kib.ac.cn/handle/151853/18292]  |
| 专题 | 昆明植物研究所_中国科学院东亚植物多样性与生物地理学重点实验室 |
| 作者单位 | 1.Natl Lib Med, Natl Ctr Biotechnol Informat, NIH, Bethesda, MD 20894 USA 2.CBS KNAW Fungal Biodivers Ctr, NL-3508 AD Utrecht, Netherlands 3.Univ Perugia, Dept Pharmaceut Sci Microbiol, I-06100 Perugia, Italy 4.Univ Sydney, Marie Bashir Inst Infect Dis & Biosecur, Mol Mycol Res Lab,Sydney Med Sch,Westmead Hosp, Westmead Millennium Inst,Ctr Infect Dis & Microbi, Westmead, NSW 2145, Australia 5.Univ Gothenburg, Dept Biol & Environm Sci, S-40530 Gothenburg, Sweden 6.Univ Tennessee, Knoxville, TN 37920 USA 7.Univ Illinois, Illinois Nat Hist Survey, Champaign, IL 61820 USA 8.Royal Bot Gardens, Jodrell Lab, Mycol Sect, Richmond TW9 3DS, Surrey, England 9.Univ Tartu, Nat Hist Museum, EE-51014 Tartu, Estonia 10.Purdue Univ, Dept Bot & Plant Pathol, W Lafayette, IN 47907 USA |
| 推荐引用方式 GB/T 7714 | Schoch, Conrad L.,Robbertse, Barbara,Robert, Vincent,et al. Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi[J]. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION,2014:bau061. |
| APA | Schoch, Conrad L..,Robbertse, Barbara.,Robert, Vincent.,Duong Vu.,Cardinali, Gianluigi.,...&Federhen, Scott.(2014).Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi.DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION,bau061. |
| MLA | Schoch, Conrad L.,et al."Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi".DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2014):bau061. |
入库方式： OAI收割
来源：昆明植物研究所
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