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Chinese Academy of Sciences Institutional Repositories Grid
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CAS IR Grid
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计算技术研究所 [56]
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期刊论文 [72]
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GPMassSimulator: A Graphormer-Based Method for Glycopeptide MS/MS Spectra Prediction
期刊论文
OAI收割
ANALYTICAL CHEMISTRY, 2025, 卷号: 97, 期号: 50, 页码: 27560-27568
作者:
Ren, Yihui
;
Bu, Dongbo
;
Duan, Bo
;
Zhang, Chunming
;
Cong, Bin
  |  
收藏
  |  
浏览/下载:0/0
  |  
提交时间:2026/05/25
Accurate and Efficient Phylogenetic Inference through End-To-End Deep Learning
期刊论文
OAI收割
MOLECULAR BIOLOGY AND EVOLUTION, 2025, 卷号: 42, 期号: 11, 页码: 14
作者:
Zhang, Xinru
;
Ding, Shizhe
;
Yu, Chungong
  |  
收藏
  |  
浏览/下载:1/0
  |  
提交时间:2026/05/25
phylogenetic inference
phylogenetic tree
deep learning
Structural basis for antibiotic resistance by chloramphenicol acetyltransferase type A in
Staphylococcus aureus
期刊论文
OAI收割
SCIENTIFIC REPORTS, 2025, 卷号: 15, 期号: 1, 页码: 13
作者:
Wang, Kaiyue
;
Chen, Junwei
;
Li, Wanfang
;
Wang, Min
;
Fan, Tingwen
  |  
收藏
  |  
浏览/下载:0/0
  |  
提交时间:2025/12/03
Staphylococcus aureus
Antibiotic resistance
Chloramphenicol acetyltransferase
Chloramphenicol
Fusidic acid
GPCR-BSD: a database of binding sites of human G-protein coupled receptors under diverse states
期刊论文
OAI收割
BMC BIOINFORMATICS, 2024, 卷号: 25, 期号: 1, 页码: 16
作者:
Liu, Fan
;
Zhou, Han
;
Li, Xiaonong
;
Zhou, Liangliang
;
Yu, Chungong
  |  
收藏
  |  
浏览/下载:26/0
  |  
提交时间:2024/12/06
G-protein coupled receptor
State-specific structure
Binding site
Key residue
Database
Accurate and robust protein sequence design with CarbonDesign
期刊论文
OAI收割
NATURE MACHINE INTELLIGENCE, 2024, 卷号: 6, 期号: 5, 页码: 14
作者:
Ren, Milong
;
Yu, Chungong
;
Bu, Dongbo
;
Zhang, Haicang
  |  
收藏
  |  
浏览/下载:25/0
  |  
提交时间:2024/12/06
Accurate prediction of RNA secondary structure including pseudoknots through solving minimum-cost flow with learned potentials
期刊论文
OAI收割
COMMUNICATIONS BIOLOGY, 2024, 卷号: 7, 期号: 1, 页码: 13
作者:
Gong, Tiansu
;
Ju, Fusong
;
Bu, Dongbo
  |  
收藏
  |  
浏览/下载:30/0
  |  
提交时间:2024/05/20
SASA-Net: A Spatial-Aware Self-Attention Mechanism for Building Protein 3D Structure Directly From Inter- Residue Distances
期刊论文
OAI收割
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3482-3488
作者:
Gong, Tiansu
;
Ju, Fusong
;
Sun, Shiwei
;
Bu, Dongbo
  |  
收藏
  |  
浏览/下载:29/0
  |  
提交时间:2024/05/20
Deep learning
protein structure prediction
NeuralGLS: learning to guide local search with graph convolutional network for the traveling salesman problem
期刊论文
OAI收割
NEURAL COMPUTING & APPLICATIONS, 2023, 页码: 20
作者:
Sui, Jingyan
;
Ding, Shizhe
;
Xia, Boyang
;
Liu, Ruizhi
;
Bu, Dongbo
  |  
收藏
  |  
浏览/下载:66/0
  |  
提交时间:2023/12/04
Graph convolutional network
Guided local search
Traveling salesman problem
Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms
期刊论文
OAI收割
GENOMICS PROTEOMICS & BIOINFORMATICS, 2023, 卷号: 21, 期号: 5, 页码: 913-925
作者:
Huang, Bin
;
Kong, Lupeng
;
Wang, Chao
;
Ju, Fusong
;
Zhang, Qi
  |  
收藏
  |  
浏览/下载:50/0
  |  
提交时间:2024/05/20
Protein folding
Protein structure prediction
Deep learning
Transformer
Language model
Dominant neoantigen verification in hepatocellular carcinoma by a single-plasmid system coexpressing patient HLA and antigen
期刊论文
OAI收割
JOURNAL FOR IMMUNOTHERAPY OF CANCER, 2023, 卷号: 11, 期号: 4, 页码: 16
作者:
Chen, Pu
;
Chen, Dongbo
;
Bu, Dechao
;
Gao, Jie
;
Qin, Wanying
  |  
收藏
  |  
浏览/下载:52/0
  |  
提交时间:2023/12/04
Liver Neoplasms
Antigens
Neoplasm
Immunotherapy
Immunoassay
Immunogenicity
Vaccine