中国科学院机构知识库网格
Chinese Academy of Sciences Institutional Repositories Grid
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CAS IR Grid
机构
计算技术研究所 [12]
理论物理研究所 [6]
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OAI收割 [18]
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期刊论文 [18]
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2024 [1]
2023 [2]
2022 [4]
2021 [4]
2020 [2]
2019 [5]
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Biochemist... [5]
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浏览/检索结果:
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Accurate prediction of RNA secondary structure including pseudoknots through solving minimum-cost flow with learned potentials
期刊论文
OAI收割
COMMUNICATIONS BIOLOGY, 2024, 卷号: 7, 期号: 1, 页码: 13
作者:
Gong, Tiansu
;
Ju, Fusong
;
Bu, Dongbo
  |  
收藏
  |  
浏览/下载:4/0
  |  
提交时间:2024/05/20
SASA-Net: A Spatial-Aware Self-Attention Mechanism for Building Protein 3D Structure Directly From Inter- Residue Distances
期刊论文
OAI收割
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3482-3488
作者:
Gong, Tiansu
;
Ju, Fusong
;
Sun, Shiwei
;
Bu, Dongbo
  |  
收藏
  |  
浏览/下载:2/0
  |  
提交时间:2024/05/20
Deep learning
protein structure prediction
Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms
期刊论文
OAI收割
GENOMICS PROTEOMICS & BIOINFORMATICS, 2023, 卷号: 21, 期号: 5, 页码: 913-925
作者:
Huang, Bin
;
Kong, Lupeng
;
Wang, Chao
;
Ju, Fusong
;
Zhang, Qi
  |  
收藏
  |  
浏览/下载:13/0
  |  
提交时间:2024/05/20
Protein folding
Protein structure prediction
Deep learning
Transformer
Language model
Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction
期刊论文
OAI收割
BIOINFORMATICS, 2022, 卷号: 38, 期号: 4, 页码: 990-996
作者:
Ju, Fusong
;
Zhu, Jianwei
;
Zhang, Qi
;
Wei, Guozheng
;
Sun, Shiwei
  |  
收藏
  |  
浏览/下载:34/0
  |  
提交时间:2022/12/07
ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs
期刊论文
OAI收割
JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14
作者:
Kong, Lupeng
;
Ju, Fusong
;
Zheng, Wei-mou
;
Zhu, Jianwei
;
Sun, Shiwei
  |  
收藏
  |  
浏览/下载:33/0
  |  
提交时间:2022/12/07
deep learning and protein threading
protein alignment
protein structure prediction
Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction
期刊论文
OAI收割
BIOINFORMATICS, 2022, 卷号: 38, 期号: 4, 页码: 990-996
作者:
Ju, Fusong
;
Zhu, Jianwei
;
Zhang, Qi
;
Wei, Guozheng
;
Sun, Shiwei
  |  
收藏
  |  
浏览/下载:36/0
  |  
提交时间:2023/01/16
RECOGNITION
FRAGMENTS
FOLD
ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs
期刊论文
OAI收割
JOURNAL OF COMPUTATIONAL BIOLOGY, 2022
作者:
Kong, Lupeng
;
Ju, Fusong
;
Zheng, Wei-mou
;
Zhu, Jianwei
;
Sun, Shiwei
  |  
收藏
  |  
浏览/下载:30/0
  |  
提交时间:2023/01/16
SERVER
Filling gaps of genome scaffolds via probabilistic searching optical maps against assembly graph
期刊论文
OAI收割
BMC Bioinformatics, 2021, 卷号: 22, 期号: 1
作者:
Huang,Bin
;
Wei,Guozheng
;
Wang,Bing
;
Ju,Fusong
;
Zhong,Yi
  |  
收藏
  |  
浏览/下载:50/0
  |  
提交时间:2021/12/01
Genome assembly
Gap filling
Scaffolding
Optical maps
Probabilistic search
FALCON2: a web server for high-quality prediction of protein tertiary structures
期刊论文
OAI收割
BMC BIOINFORMATICS, 2021, 卷号: 22, 期号: 1, 页码: 14
作者:
Kong, Lupeng
;
Ju, Fusong
;
Zhang, Haicang
;
Sun, Shiwei
;
Bu, Dongbo
  |  
收藏
  |  
浏览/下载:48/0
  |  
提交时间:2021/12/01
Protein structure prediction
Template-based modeling
Ab initio prediction
Protein structure prediction web service
CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction
期刊论文
OAI收割
NATURE COMMUNICATIONS, 2021, 卷号: 12, 期号: 1, 页码: 9
作者:
Ju, Fusong
;
Zhu, Jianwei
;
Shao, Bin
;
Kong, Lupeng
;
Liu, Tie-Yan
  |  
收藏
  |  
浏览/下载:26/0
  |  
提交时间:2021/12/01