中国科学院机构知识库网格
Chinese Academy of Sciences Institutional Repositories Grid
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CAS IR Grid
机构
计算技术研究所 [7]
理论物理研究所 [3]
采集方式
OAI收割 [10]
内容类型
期刊论文 [10]
发表日期
2023 [1]
2022 [2]
2021 [3]
2020 [2]
2019 [1]
2017 [1]
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学科主题
Biochemist... [2]
Biotechnol... [2]
Mathematic... [2]
Computer S... [1]
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Science & ... [1]
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Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms
期刊论文
OAI收割
GENOMICS PROTEOMICS & BIOINFORMATICS, 2023, 卷号: 21, 期号: 5, 页码: 913-925
作者:
Huang, Bin
;
Kong, Lupeng
;
Wang, Chao
;
Ju, Fusong
;
Zhang, Qi
  |  
收藏
  |  
浏览/下载:13/0
  |  
提交时间:2024/05/20
Protein folding
Protein structure prediction
Deep learning
Transformer
Language model
ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs
期刊论文
OAI收割
JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14
作者:
Kong, Lupeng
;
Ju, Fusong
;
Zheng, Wei-mou
;
Zhu, Jianwei
;
Sun, Shiwei
  |  
收藏
  |  
浏览/下载:33/0
  |  
提交时间:2022/12/07
deep learning and protein threading
protein alignment
protein structure prediction
ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs
期刊论文
OAI收割
JOURNAL OF COMPUTATIONAL BIOLOGY, 2022
作者:
Kong, Lupeng
;
Ju, Fusong
;
Zheng, Wei-mou
;
Zhu, Jianwei
;
Sun, Shiwei
  |  
收藏
  |  
浏览/下载:30/0
  |  
提交时间:2023/01/16
SERVER
FALCON2: a web server for high-quality prediction of protein tertiary structures
期刊论文
OAI收割
BMC BIOINFORMATICS, 2021, 卷号: 22, 期号: 1, 页码: 14
作者:
Kong, Lupeng
;
Ju, Fusong
;
Zhang, Haicang
  |  
收藏
  |  
浏览/下载:48/0
  |  
提交时间:2021/12/01
Protein structure prediction
Template-based modeling
Ab initio prediction
Protein structure prediction web service
CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction
期刊论文
OAI收割
NATURE COMMUNICATIONS, 2021, 卷号: 12, 期号: 1, 页码: 9
作者:
Ju, Fusong
;
Zhu, Jianwei
;
Shao, Bin
;
Kong, Lupeng
;
Liu, Tie-Yan
  |  
收藏
  |  
浏览/下载:26/0
  |  
提交时间:2021/12/01
CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction
期刊论文
OAI收割
NATURE COMMUNICATIONS, 2021, 卷号: 12, 期号: 1, 页码: 2535
作者:
Ju, Fusong
;
Zhu, Jianwei
;
Shao, Bin
;
Kong, Lupeng
;
Liu, Tie-Yan
  |  
收藏
  |  
浏览/下载:33/0
  |  
提交时间:2021/09/27
CONTACTS
POTENTIALS
ISSEC: inferring contacts among protein secondary structure elements using deep object detection
期刊论文
OAI收割
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 13
作者:
Zhang, Qi
;
Zhu, Jianwei
;
Ju, Fusong
;
Kong, Lupeng
;
Sun, Shiwei
  |  
收藏
  |  
浏览/下载:28/0
  |  
提交时间:2021/12/01
Protein structure
Secondary structure elements
Inter-SSE contacts
ISSEC: inferring contacts among protein secondary structure elements using deep object detection
期刊论文
OAI收割
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 503
作者:
Zhang, Qi
;
Zhu, Jianwei
;
Ju, Fusong
;
Kong, Lupeng
;
Sun, Shiwei
  |  
收藏
  |  
浏览/下载:34/0
  |  
提交时间:2021/09/27
HELIX-HELIX INTERACTIONS
INVERSE COVARIANCE ESTIMATION
RESIDUE CONTACTS
BETA-SHEETS
PREDICTION
MEMBRANE
Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling
期刊论文
OAI收割
BMC BIOINFORMATICS, 2019, 卷号: 20, 页码: 10
作者:
Zhang, Haicang
;
Wang, Chao
;
Bu, Dongbo
;
Zheng, Wei-Mou
;
Sun, Shiwei
  |  
收藏
  |  
浏览/下载:90/0
  |  
提交时间:2019/08/16
Protein structure prediction
Energy function
Attraction-basin
Reverse Monte Carlo sampling
Monte Carlo search
Linear program
Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts
期刊论文
OAI收割
BIOINFORMATICS, 2017, 卷号: 33, 期号: 23, 页码: 3749-3757
作者:
Zhu, Jianwei
;
Zhang, Haicang
;
Li, Shuai Cheng
;
Wang, Chao
;
Kong, Lupeng
  |  
收藏
  |  
浏览/下载:31/0
  |  
提交时间:2019/12/10