中国科学院机构知识库网格
Chinese Academy of Sciences Institutional Repositories Grid
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OAI收割 [11]
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期刊论文 [11]
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Molecular dynamics simulations of ovalbumin adsorption at squalene/ water interface
期刊论文
OAI收割
CHINESE JOURNAL OF CHEMICAL ENGINEERING, 2022, 卷号: 50, 页码: 369-378
作者:
Xiong, Qingxia
;
Ren, Ying
;
Xia, Yufei
;
Ma, Guanghui
;
Noda, Reiji
  |  
收藏
  |  
浏览/下载:21/0
  |  
提交时间:2023/02/24
Molecular dynamics simulation
Metadynamics
Protein adsorption
Structural stability
Ovalbumin
Exploring the structural transition mechanisms of a pair of poly(N-isopropylacrylamide) chains in aqueous solution through coarse-grained molecular simulations coupled with metadynamics
期刊论文
OAI收割
MOLECULAR SIMULATION, 2021, 页码: 10
作者:
Yang, Xue-Dan
;
Chen, Wei
;
Ren, Ying
;
Chu, Liang-Yin
  |  
收藏
  |  
浏览/下载:38/0
  |  
提交时间:2021/03/29
Poly(N-isopropylacrylamide)
Coarse-grained molecular dynamics
free energy
metadynamics
Revealing the Positive Binding Cooperativity Mechanism between the Orthosteric and the Allosteric Antagonists of CCR2 by Metadynamics and Gaussian Accelerated Molecular Dynamics Simulations
期刊论文
OAI收割
ACS CHEMICAL NEUROSCIENCE, 2020, 卷号: 11, 期号: 4, 页码: 628-637
作者:
An, Xiaoli
;
Bai, Qifeng
;
Bing, Zhitong
;
Liu, Hongli
;
Zhang, Qianqian
  |  
收藏
  |  
浏览/下载:28/0
  |  
提交时间:2022/01/18
CC chemokine receptor 2
orthosteric antagonist
allosteric antagonist
binding cooperativity
metadynamics simulation
Gaussian accelerated MD simulation
Computational Insight Into the Small Molecule Intervening PD-L1 Dimerization and the Potential Structure-Activity Relationship
期刊论文
OAI收割
FRONTIERS IN CHEMISTRY, 2019, 卷号: 7, 页码: 15
作者:
Shi, Danfeng
;
An, Xiaoli
;
Bai, Qifeng
;
Bing, Zhitong
;
Zhou, Shuangyan
  |  
收藏
  |  
浏览/下载:14/0
  |  
提交时间:2022/01/19
PD-L1
small-molecule inhibitors
molecular dynamics simulation
metadynamics simulation
R-group QSAR
All-atom structure ensembles of islet amyloid polypeptides determined by enhanced sampling and experiment data restraints
期刊论文
OAI收割
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2019, 卷号: 87, 期号: 7, 页码: 541-550
作者:
Su, Xinyue
;
Wang, Ke
;
Liu, Na
;
Chen, Jiawen
;
Li, Yong
  |  
收藏
  |  
浏览/下载:86/0
  |  
提交时间:2019/10/14
aggregation
chemical shift restraint
islet amylod polypeptide
metadynamics
All-atom structure ensembles of islet amyloid polypeptides determined by enhanced sampling and experiment data restraints
期刊论文
OAI收割
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2019, 卷号: 87, 期号: 7, 页码: 541-550
作者:
Su, Xinyue
;
Wang, Ke
;
Liu, Na
;
Chen, Jiawen
;
Li, Yong
  |  
收藏
  |  
浏览/下载:23/0
  |  
提交时间:2019/10/17
aggregation
chemical shift restraint
islet amylod polypeptide
metadynamics
The cloud point phenomenon of ionic surfactants: A view from molecular dynamics and metadynamics simulation
期刊论文
OAI收割
JOURNAL OF MOLECULAR LIQUIDS, 2018, 卷号: 269, 页码: 298-303
作者:
Liu, Guokui
;
Feng, Jin
;
Wang, Honglei
;
Gao, Fengfeng
  |  
收藏
  |  
浏览/下载:46/0
  |  
提交时间:2018/12/21
Molecular dynamics
Metadynamics simulations
Cloud point
Tetrabutylammonium dodecyl sulfate
Simulation of coupled folding and binding of an intrinsically disordered protein in explicit solvent with metadynamics
期刊论文
OAI收割
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2016, 卷号: 68, 期号: JULY, 页码: 114-127
作者:
Han, Mengzhi
;
Xu, Ji
;
Ren, Ying
;
Li, Jinghai
收藏
  |  
浏览/下载:35/0
  |  
提交时间:2016/11/21
Measles virus nucleoprotein
Intrinsically disordered protein
Coupled folding and binding
Molecular dynamics
Metadynamics
Free energy surface
Free Energy Simulations with the AMOEBA Polarizable Force Field and Metadynamics on GPU Platform
期刊论文
OAI收割
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2016, 卷号: 37, 期号: 6, 页码: 614-622
作者:
Zhang, Yuebin
;
Li, Guohui
;
Peng, Xiangda
;
Chu, Huiying
  |  
收藏
  |  
浏览/下载:28/0
  |  
提交时间:2019/06/20
Amoeba Polarizable Force Field
Metadynamics
Gpu Acceleration
Free Energy Simulations
Openmm
Plumed
Alanine Dipeptide
Water Simulation
Simulations of flow induced structural transition of the beta-switch region of glycoprotein Ib alpha
期刊论文
OAI收割
BIOPHYSICAL CHEMISTRY, 2016, 卷号: 209, 期号: FEB, 页码: 9-20
作者:
Han, Mengzhi
;
Xu, Ji
;
Ren, Ying
;
Li, Jinghai
收藏
  |  
浏览/下载:18/0
  |  
提交时间:2016/04/14
Glycoprotein Ib alpha
Protein conformational transition
Metadynamics
Free energy landscape
Molecular dynamics