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Chinese Academy of Sciences Institutional Repositories Grid
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CAS IR Grid
机构
上海药物研究所 [6]
生物物理研究所 [1]
理论物理研究所 [1]
大连化学物理研究所 [1]
高能物理研究所 [1]
采集方式
OAI收割 [10]
内容类型
期刊论文 [10]
发表日期
2020 [1]
2017 [1]
2016 [1]
2012 [1]
2009 [2]
2008 [2]
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学科主题
Biochemist... [1]
Physics [1]
物理化学 [1]
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Accurate prediction of relative binding affinities of a series of HIV-1 protease inhibitors using semi-empirical quantum mechanical charge
期刊论文
OAI收割
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2020, 页码: 8
作者:
Peng, Cheng
;
Wang, Jinan
;
Xu, Zhijian
;
Cai, Tingting
;
Zhu, Weiliang
  |  
收藏
  |  
浏览/下载:24/0
  |  
提交时间:2020/07/01
adaptive steered molecular dynamics (ASMD)
binding affinity
HIV-1 protease
semi-empirical quantum mechanics
Anisotropic formation mechanism and nanomechanics for the self-assembly process of cross-beta peptides
期刊论文
OAI收割
CHINESE PHYSICS B, 2017, 卷号: 26, 期号: 12, 页码: 128701
作者:
Deng, L
;
Zhao, YR
;
Zhou, P
;
Xu, H
;
Wang, YT
  |  
收藏
  |  
浏览/下载:34/0
  |  
提交时间:2018/12/26
STEERED MOLECULAR-DYNAMICS
ATOMIC-FORCE MICROSCOPY
PARTICLE MESH EWALD
AMYLOID FIBRILS
FREE-ENERGY
INTERMOLECULAR FORCES
MONTE-CARLO
NANOTUBES
SYSTEMS
SIMULATIONS
Effects of ligand binding on the mechanical stability of protein GB1 studied by steered molecular dynamics simulation
期刊论文
OAI收割
JOURNAL OF MOLECULAR MODELING, 2016, 卷号: 22, 期号: 8
作者:
Su, JG
;
Zhao, SX
;
Wang XF(王晓峰)
;
Li JY(李敬源)
;
Wang, XF
  |  
收藏
  |  
浏览/下载:29/0
  |  
提交时间:2017/07/24
Protein mechanics
Mechanical unfolding
Allosteric regulation
Force-bearing
Ligand binding
Steered molecular dynamics simulation
Molecular dynamics simulation exploration of unfolding and refolding of a ten-amino acid miniprotein
期刊论文
OAI收割
amino acids, 2012, 卷号: 43, 期号: 2, 页码: 557-565
作者:
Zhao, Guang-Jiu
;
Cheng, Chang-Li
收藏
  |  
浏览/下载:30/0
  |  
提交时间:2013/10/11
Protein folding
Protein unfolding
Hydrogen bond
Beta-hairpin
Steered molecular dynamics
A steered molecular dynamics method with adaptive direction on adjustments
期刊论文
OAI收割
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2009, 卷号: 379, 期号: 2, 页码: 494-498
作者:
Yang, Kun
;
Liu, Xinli
;
Wang, Xicheng
;
Jiang, Hualiang
  |  
收藏
  |  
浏览/下载:23/0
  |  
提交时间:2019/01/08
Steered molecular dynamics
Dissociation pathway
Genetic algorithm
Information entropy
Metyrapone-P450 3A4 complex
Force-induced unfolding of human telomeric G-quadruplex: A steered molecular dynamics simulation study
期刊论文
OAI收割
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2009, 卷号: 379, 期号: 1, 页码: 70-75
Li, Hui
;
Cao, Enhua
;
曹恩华
;
Gisler, Thomas
收藏
  |  
浏览/下载:85/0
  |  
提交时间:2013/12/25
G-quadruplex
Unfolding
Steered molecular dynamics simulation
Single-molecule force spectrum
Intermediate state
The type IA topoisomerase catalytic cycle: A normal mode analysis and molecular dynamics simulation
期刊论文
OAI收割
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2008, 卷号: 71, 期号: 4, 页码: 1984-1994
作者:
Xiong, Bing
;
Burk, David L.
;
Shen, Jianhua
;
Luo, Xiaomin
;
Liu, Hong
  |  
收藏
  |  
浏览/下载:22/0
  |  
提交时间:2019/01/08
topoisomerase III
normal mode
steered molecular dynamics
correlation map
protein-DNA interaction
MM-PBSA
A steered molecular dynamics method with direction optimization and its applications on ligand molecule dissociation
期刊论文
OAI收割
JOURNAL OF BIOCHEMICAL AND BIOPHYSICAL METHODS, 2008, 卷号: 70, 期号: 6, 页码: 857-864
作者:
Liu, Xinli
;
Wang, Xicheng
;
Jiang, Huangliang
  |  
收藏
  |  
浏览/下载:17/0
  |  
提交时间:2019/01/08
steered molecular dynamics
molecular dissociation
genetic algorithm
metyrapone-P450 3A4 complex
Steered molecular dynamics simulations of protein-ligand interactions
期刊论文
OAI收割
SCIENCE IN CHINA SERIES B-CHEMISTRY, 2004, 卷号: 47, 期号: 5, 页码: 355-366
作者:
Xu, YC
;
Shen, JH
;
Luo, XM
;
Shen, X
;
Chen, KX
  |  
收藏
  |  
浏览/下载:33/0
  |  
提交时间:2019/01/08
molecular dynamics simulation
steered molecular dynamics simulation
atomic force microscope
avidin
biotin
huperzine A
acetylcholinesterase
HIV-1 reverse transcriptas
non-nucleoside RT inhibitor
Mutagenesis and molecular dynamics suggest structural and functional roles for residues in the N-terminal portion of the cytochrome P4502B1Ihelix
期刊论文
OAI收割
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 2004, 卷号: 423, 期号: 2, 页码: 266-276
作者:
Scott, EE
;
Liu, H
;
He, YQ
;
Li, WH
;
Halpert, JR
  |  
收藏
  |  
浏览/下载:13/0
  |  
提交时间:2019/01/08
cytochrome p450
monooxygenase
site-directed mutagenesis
steered molecular dynamics
substrate access