FishDB: an integrated functional genomics database for fishes
文献类型：期刊论文
| 作者 | Yang, Liandong1; Xu, Zetan2; Zeng, Honghui1; Sun, Ning1,3; Wu, Baosheng3,4 ; Wang, Cheng1,3; Bo, Jing3,4; Li, Lin1,3; Dong, Yang2; He, Shunping1,4,5
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| 刊名 | BMC GENOMICS
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| 出版日期 | 2020-11-17 |
| 卷号 | 21期号:1页码:5 |
| 关键词 | Fish Genome Transcriptome Evolution Adaptation |
| ISSN号 | 1471-2164 |
| DOI | 10.1186/s12864-020-07159-9 |
| 英文摘要 | Background: Hundreds of genomes and transcriptomes of fish species have been sequenced in recent years. However, fish scholarship currently lacks a comprehensive, integrated, and up-to-date collection of fish genomic data. Results: Here we present FishDB, the first database for fish multi-level omics data, available online at . The database contains 233 fish genomes, 201 fish transcriptomes, 5841 fish mitochondrial genomes, 88 fish gene sets, 16,239 miRNAs of 65 fishes, 1,330,692 piRNAs and 4852 lncRNAs of Danio rerio, 59,040 Mb untranslated regions (UTR) of 230 fishes, and 31,918 Mb coding sequences (CDS) of 230 fishes. Among these, we newly generated a total of 11 fish genomes and 53 fish transcriptomes. Conclusions: This release contains over 410,721.67 Mb sequences and provides search functionality, a BLAST server, JBrowse, and PrimerServer modules. |
| 资助项目 | Strategic Priority Research Program of Chinese Academy of Sciences[XDB31000000] ; National Natural Science Foundation of China[31972866] ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China |
| WOS研究方向 | Biotechnology & Applied Microbiology ; Genetics & Heredity |
| 语种 | 英语 |
| WOS记录号 | WOS:000594649800002 |
| 出版者 | BMC |
| 资助机构 | Strategic Priority Research Program of Chinese Academy of Sciences ; National Natural Science Foundation of China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China |
| 版本 | 出版稿 |
| 源URL | [http://ir.idsse.ac.cn/handle/183446/8435]  |
| 专题 | 深海科学研究部_深海生物学研究室_深海鱼类物种与基因组多样性的研究 |
| 通讯作者 | He, Shunping |
| 作者单位 | 1.Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Peoples R China 2.Yunnan Agr Univ, State Key Lab Conservat & Utilizat Bioresources Y, Kunming 650201, Yunnan, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 4.Chinese Acad Sci, Inst Deep Sea Sci & Engn, Sanya 572000, Peoples R China 5.Chinese Acad Sci, Ctr Excellence Anim Evolut & Genet, Kunming 650223, Yunnan, Peoples R China |
| 推荐引用方式 GB/T 7714 | Yang, Liandong,Xu, Zetan,Zeng, Honghui,et al. FishDB: an integrated functional genomics database for fishes[J]. BMC GENOMICS,2020,21(1):5. |
| APA | Yang, Liandong.,Xu, Zetan.,Zeng, Honghui.,Sun, Ning.,Wu, Baosheng.,...&He, Shunping.(2020).FishDB: an integrated functional genomics database for fishes.BMC GENOMICS,21(1),5. |
| MLA | Yang, Liandong,et al."FishDB: an integrated functional genomics database for fishes".BMC GENOMICS 21.1(2020):5. |
入库方式： OAI收割
来源：深海科学与工程研究所
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