中国科学院机构知识库网格
Chinese Academy of Sciences Institutional Repositories Grid
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CAS IR Grid
机构
大连化学物理研究所 [9]
上海药物研究所 [8]
昆明植物研究所 [3]
西北高原生物研究所 [2]
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中国科学院大学 [2]
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期刊论文 [35]
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Which species does the virus like most: Binding modes study between SARS-CoV-2 S protein and ACE2 receptor
期刊论文
OAI收割
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2021, 卷号: 105, 页码: 107893
作者:
Guo,Sheng
;
Yang,Jing
;
Lei,Yu
;
Liu,Bin
;
Zhang,Wei
  |  
收藏
  |  
浏览/下载:34/0
  |  
提交时间:2022/04/02
SARS-CoV-2
COVID-19
Homology modeling
Molecular dynamics simulation
Binding free energy
CORONAVIRUS SPIKE PROTEIN
ACTIVATION
GROMACS
ENTRY
Mechanistic in silico modeling of bisphenols to predict estrogen and glucocorticoid disrupting potentials
期刊论文
OAI收割
SCIENCE OF THE TOTAL ENVIRONMENT, 2020, 卷号: 728, 页码: 1-11
作者:
Chen, Qinchang
;
Zhou, Chengzhuo
;
Shi, Wei
;
Wang, Xiaoxiang
;
Xia, Pu
  |  
收藏
  |  
浏览/下载:31/0
  |  
提交时间:2021/09/14
Endocrine disruptor
Estrogen receptor
Glucocorticoid receptor
Coregulators
Accelerated molecular dynamics simulations
Binding free energy
SAMPL6 host-guest binding affinities and binding poses from spherical-coordinates-biased simulations
期刊论文
OAI收割
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2020, 卷号: 34, 期号: 5, 页码: 589-600
作者:
Sun, Zhaoxi
;
He, Qiaole
;
Li, Xiao
;
Zhu, Zhengdan
  |  
收藏
  |  
浏览/下载:38/0
  |  
提交时间:2020/07/01
Free energy calculation
Binding pose
Binding affinity
Spherical coordinates
SAMPL6
Improving the accuracy of predicting protein-ligand binding-free energy with semiempirical quantum chemistry charge
期刊论文
OAI收割
FUTURE MEDICINAL CHEMISTRY, 2019, 卷号: 11, 期号: 4, 页码: 303-321
作者:
Peng, Cheng
;
Wang, Jinan
;
Yu, Yuqi
;
Wang, Guimin
;
Chen, Zhaoqiang
  |  
收藏
  |  
浏览/下载:22/0
  |  
提交时间:2020/07/01
atomic charge
binding-free energy
electrostatic polarization
semiempirical quantum mechanics
solvated interaction energy
Molecular docking, binding free energy analysis, and biological evaluation of bisabolonalone hydrazone carboxamides as H+,K+-ATPase reversible inhibitors
期刊论文
OAI收割
MEDICINAL CHEMISTRY RESEARCH, 2018, 卷号: 27, 期号: 1, 页码: 332-340
作者:
She, Xin-Xin
;
Dong, Qing
;
Luo, Hua-Jun
;
Wang, Jun-Zhi
;
Huang, Nian-Yu
  |  
收藏
  |  
浏览/下载:83/0
  |  
提交时间:2019/06/20
Molecular Docking
Binding
Free Energy
Bisabolonalone Hydrazone Carboxamides
H++
k+-atpase
Structural insight into precursor tRNA processing by yeast ribonuclease P
期刊论文
OAI收割
SCIENCE, 2018, 卷号: 362, 期号: 6415, 页码: 657-+
作者:
Lan, Pengfei
;
Chen, Juan
;
Shi, Shaohua
;
Wu, Jian
;
Lei, Ming
  |  
收藏
  |  
浏览/下载:42/0
  |  
提交时间:2019/04/28
Pre-transfer-rna
Density-functional Thermochemistry
Particle Electron Cryomicroscopy
Free-energy Calculations
Metal-binding Site
Molecular-dynamics
Crystal-structure
Active-site
Biological Applications
2-metal-ion Mechanism
Virtual screening of B-Raf kinase inhibitors: A combination of pharmacophore modelling, molecular docking, 3D-QSAR model and binding free energy calculation studies
期刊论文
OAI收割
COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2017, 卷号: 70, 页码: 186-190
作者:
Zhang, Wen
;
Qiu, Kai-Xiong
;
Yu, Fang
;
Xie, Xiao-Guang
;
Zhang, Shu-Qun
  |  
收藏
  |  
浏览/下载:26/0
  |  
提交时间:2017/12/11
B-raf Kinase Inhibitors
Virtual Screening
Pharmacophore
Molecular Docking
3d Qsar
Binding Free Energy Calculation
A salt-bridge switch in the molecular recognition between RS receptor and RGD ligand from the ABEEM sigma pi molecular dynamics simulations
期刊论文
OAI收割
MOLECULAR SIMULATION, 2017, 卷号: 43, 期号: 13-16, 页码: 1045-1055
作者:
Yu, Ling
;
Yang, Zhong-Zhi
;
Zhang, Chao
;
Zhao, Dong-Xia
;
Wang, Qian
  |  
收藏
  |  
浏览/下载:29/0
  |  
提交时间:2019/06/20
Molecular Dynamics
Flexible Recognition
Polarisation Signal
Water-bridge
Binding Free Energy
Molecular docking for drug discovery and development: a widely used approach but far from perfect
期刊论文
OAI收割
FUTURE MEDICINAL CHEMISTRY, 2016, 卷号: 8, 期号: 14
作者:
Wang, Guimin
;
Zhu, Weiliang
  |  
收藏
  |  
浏览/下载:26/0
  |  
提交时间:2019/01/08
covalent binding
free energy
molecular docking
scoring function
solvent molecule
structural flexibility
thermodynamics and kinetics
Simulation of coupled folding and binding of an intrinsically disordered protein in explicit solvent with metadynamics
期刊论文
OAI收割
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2016, 卷号: 68, 期号: JULY, 页码: 114-127
作者:
Han, Mengzhi
;
Xu, Ji
;
Ren, Ying
;
Li, Jinghai
收藏
  |  
浏览/下载:35/0
  |  
提交时间:2016/11/21
Measles virus nucleoprotein
Intrinsically disordered protein
Coupled folding and binding
Molecular dynamics
Metadynamics
Free energy surface