中国科学院机构知识库网格
Chinese Academy of Sciences Institutional Repositories Grid
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CAS IR Grid
机构
昆明植物研究所 [10]
水生生物研究所 [7]
金属研究所 [4]
青藏高原研究所 [3]
上海应用物理研究所 [3]
长春应用化学研究所 [3]
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期刊论文 [47]
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2023 [2]
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2020 [2]
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2018 [4]
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Biochemist... [4]
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Learning Sequential and Structural Dependencies Between Nucleotides for RNA N6-Methyla-denosine Site Identification
期刊论文
OAI收割
IEEE/CAA Journal of Automatica Sinica, 2024, 卷号: 11, 期号: 10, 页码: 2123-2134
作者:
Guodong Li
;
Bowei Zhao
;
Xiaorui Su
;
Dongxu Li
;
Yue Yang
  |  
收藏
  |  
浏览/下载:7/0
  |  
提交时间:2024/09/03
Cross-domain reconstruction
cross-species prediction
N6-methyladenosine (m6A) modification site
RNA sequence
sequential and structural dependencies
Progress, challenge and prospect of plant plastome annotation
期刊论文
OAI收割
FRONTIERS IN PLANT SCIENCE, 2023, 卷号: 14, 页码: 1166140
作者:
Qu,Xiao-Jian
;
Zou,Dan
;
Zhang,Rui-Yu
;
Stull,Gregory W.
;
Yi,Ting-Shuang
  |  
收藏
  |  
浏览/下载:8/0
  |  
提交时间:2024/05/09
annotation standards
chloroplast genome
plastome
protein structure
pseudogenes
RNA-editing genes
MITOCHONDRIAL GENES
RNA
GENOME
SEQUENCE
CHLOROPLASTS
TRANSLATION
Phylotranscriptomic analyses reveal deep gene tree discordance in Camellia (Theaceae)
期刊论文
OAI收割
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2023, 卷号: 188, 页码: 107912
作者:
Zhang,Qiong
;
Folk,Ryan A.
;
Mo,Zhi-Qiong
;
Ye,Hang
;
Zhang,Zhao-Yuan
  |  
收藏
  |  
浏览/下载:14/0
  |  
提交时间:2024/07/25
Camellia
Gene tree discordance
Transcriptome
Rapid diversification
Selective pressure
RNA-SEQ DATA
PHYLOGENETIC ANALYSIS
NUCLEAR GENES
SEQUENCE
EVOLUTION
RESOLUTION
HISTORY
INFERENCE
ALGORITHM
SELECTION
Reconstruction of Full-Length circRNA Sequences Using Chimeric Alignment Information
期刊论文
OAI收割
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 卷号: 23, 期号: 12, 页码: 15
作者:
Hossain, Md. Tofazzal
;
Zhang, Jingjing
;
Reza, Md. Selim
;
Peng, Yin
;
Feng, Shengzhong
  |  
收藏
  |  
浏览/下载:32/0
  |  
提交时间:2022/12/07
circular RNA
reconstruction of circRNA sequence
full-length sequence
Phylogenomics and the flowering plant tree of life
期刊论文
OAI收割
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022
作者:
Guo, Cen
;
Luo, Yang
;
Gao, Lian-Ming
;
Yi, Ting-Shuang
;
Li, Hong-Tao
  |  
收藏
  |  
浏览/下载:12/0
  |  
提交时间:2024/08/21
angiosperms
hybridization
incomplete lineage sorting
orthology inference
phylogenetic conflicts
reduced representation sequencing
whole-genome sequencing
whole-genome duplication
SYSTEMATIC-ERRORS
RNA-SEQ
SEQUENCE CAPTURE
SEED PLANTS
DATA SETS
GENOME
EVOLUTION
RADSEQ
TOOL
CLASSIFICATION
Genome surveying reveals the complete chloroplast genome and nuclear genomic features of the crocin-producing plant Gardenia jasminoides Ellis
期刊论文
OAI收割
GENETIC RESOURCES AND CROP EVOLUTION, 2021, 卷号: 68, 期号: 3, 页码: 1165-1180
作者:
Wang,Wencai
  |  
收藏
  |  
浏览/下载:48/0
  |  
提交时间:2022/04/02
Gardenia jasminoides
Genome surveying
Chloroplast genome
Nuclear genomic features
Crocin-producing plant
RNA
SEQUENCE
CLEAVAGE
MITOCHONDRIAL
CONSTITUENTS
ORGANIZATION
ANNOTATION
RUBIACEAE
REPEAT
ORIGIN
Draft genome of the herbaceous bamboo Raddia distichophylla
期刊论文
OAI收割
G3-GENES GENOMES GENETICS, 2021, 卷号: 11, 期号: 2, 页码: jkaa049
作者:
Li,Wei
;
Shi,Cong
;
Li,Kui
;
Zhang,Qun-Jie
;
Tong,Yan
  |  
收藏
  |  
浏览/下载:22/0
  |  
提交时间:2022/04/02
bamboos
Raddia distichophylla
whole-genome sequencing
DE-NOVO IDENTIFICATION
SSR-MARKERS
SEQUENCE
RNA
ALIGNMENT
POACEAE
ANNOTATION
PROGRAM
PROTEIN
PLANTS
Transcriptomes of Saussurea (Asteraceae) Provide Insights into High-Altitude Adaptation
期刊论文
OAI收割
PLANTS-BASEL, 2021, 卷号: 10, 期号: 8, 页码: 1715
作者:
Zhang,Xu
;
Sun,Yanxia
;
Landis,Jacob B.
;
Shen,Jun
;
Zhang,Huajie
  |  
收藏
  |  
浏览/下载:66/0
  |  
提交时间:2022/04/02
high-altitude adaptation
Saussurea
transcriptomes
positive selection
extreme environments
lineage-specific genes
RNA-SEQ
HENGDUAN MOUNTAINS
STRESS ACCLIMATION
SEQUENCE ALIGNMENT
HIGH ELEVATIONS
METABOLISM
GENOME
ANNOTATION
EVOLUTION
SELECTION
Combining High Speed ELM Learning with a Deep Convolutional Neural Network Feature Encoding for Predicting Protein-RNA Interactions
期刊论文
OAI收割
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 3, 页码: 972-980
作者:
Wang, L (Wang, Lei)[ 1 ]
;
You, ZH (You, Zhu-Hong)[ 2 ]
;
Huang, DS (Huang, De-Shuang)[ 3 ]
;
Zhou, FF (Zhou, Fengfeng)[ 4,5 ]
  |  
收藏
  |  
浏览/下载:40/0
  |  
提交时间:2020/12/09
Proteins
RNA
Convolution
Neural networks
Benchmark testing
Feature extraction
Sparse matrices
Convolution neural network
extreme learning machine
RNA-protein interactions
sequence
RPI-SE: a stacking ensemble learning framework for ncRNA-protein interactions prediction using sequence information
期刊论文
OAI收割
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 1-10
作者:
Yi, HC (Yi, Hai-Cheng)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 1,2 ]
;
Wang, MN (Wang, Mei-Neng)[ 3 ]
;
Guo, ZH (Guo, Zhen-Hao)[ 1 ]
;
Wang, YB (Wang, Yan-Bin)[ 1 ]
  |  
收藏
  |  
浏览/下载:21/0
  |  
提交时间:2020/04/21
Sequence analysis
RNA-protein interaction
ncRNA
Ensemble learning
Position weight matrix
Legendre moments