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Chinese Academy of Sciences Institutional Repositories Grid
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CAS IR Grid
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上海药物研究所 [7]
武汉物理与数学研究所 [6]
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青岛生物能源与过程研... [3]
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OAI收割 [31]
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期刊论文 [30]
学位论文 [1]
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2023 [2]
2022 [1]
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2020 [3]
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支撑与管理::仿真与... [1]
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Temperature-Dependent Paracrystalline Nucleation in Atomically Disordered Diamonds
期刊论文
OAI收割
NANO LETTERS, 2023, 卷号: 24, 期号: 1, 页码: 312-318
作者:
Zhang, Zhongting
;
Fang, Zhouyu
;
Wu HA(吴恒安)
;
Zhu, Yinbo
  |  
收藏
  |  
浏览/下载:4/0
  |  
提交时间:2024/02/19
paracrystalline diamonds
atomically disordered diamonds
amorphous carbons
free energy surface
Fundamental links between shear transformation, fi relaxation, and string-like motion in metallic glasses
期刊论文
OAI收割
ACTA MATERIALIA, 2023, 卷号: 246, 页码: 11
作者:
Zhou, ZhenYa
;
Sun, Yang
;
Gao, Liang
;
Wang YJ(王云江)
;
Yu, HaiBin
  |  
收藏
  |  
浏览/下载:16/0
  |  
提交时间:2023/03/15
Metallic glasses
Plastic deformation
relaxation
String-like motion
Accelerated molecular dynamics
Molecular dynamics simulations of ovalbumin adsorption at squalene/ water interface
期刊论文
OAI收割
CHINESE JOURNAL OF CHEMICAL ENGINEERING, 2022, 卷号: 50, 页码: 369-378
作者:
Xiong, Qingxia
;
Ren, Ying
;
Xia, Yufei
;
Ma, Guanghui
;
Noda, Reiji
  |  
收藏
  |  
浏览/下载:14/0
  |  
提交时间:2023/02/24
Molecular dynamics simulation
Metadynamics
Protein adsorption
Structural stability
Ovalbumin
An Integrated Deep Learning and Molecular Dynamics Simulation-Based Screening Pipeline Identifies Inhibitors of a New Cancer Drug Target TIPE2
期刊论文
OAI收割
FRONTIERS IN PHARMACOLOGY, 2021, 卷号: 12, 页码: 13
作者:
Zhang, Haiping
;
Li, Junxin
;
Saravanan, Konda Mani
;
Wu, Hao
;
Wang, Zhichao
  |  
收藏
  |  
浏览/下载:21/0
  |  
提交时间:2022/06/21
TIPE2
UM-164
virtual screening
deep learning
molecular dynamics simulation
Exploring the structural transition mechanisms of a pair of poly(N-isopropylacrylamide) chains in aqueous solution through coarse-grained molecular simulations coupled with metadynamics
期刊论文
OAI收割
MOLECULAR SIMULATION, 2021, 页码: 10
作者:
Yang, Xue-Dan
;
Chen, Wei
;
Ren, Ying
;
Chu, Liang-Yin
  |  
收藏
  |  
浏览/下载:24/0
  |  
提交时间:2021/03/29
Poly(N-isopropylacrylamide)
Coarse-grained molecular dynamics
free energy
metadynamics
Increasing the Sampling Efficiency of Protein Conformational Change by Combining a Modified Replica Exchange Molecular Dynamics and Normal Mode Analysis
期刊论文
OAI收割
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2021, 卷号: 17, 期号: 1, 页码: 13-28
作者:
Peng, Cheng
;
Wang, Jinan
;
Shi, Yulong
;
Xu, Zhijian
;
Zhu, Weiliang
  |  
收藏
  |  
浏览/下载:16/0
  |  
提交时间:2021/05/24
Unraveling strongly entropic effect on beta-relaxation in metallic glass: Insights from enhanced atomistic samplings over experimentally relevant timescales
期刊论文
OAI收割
PHYSICAL REVIEW B, 2020, 卷号: 102, 期号: 17, 页码: 174103
作者:
Yang YB(杨一博)
;
Yang Q
;
Wei D(魏丹)
;
Dai LH(戴兰宏)
;
Yu HB
  |  
收藏
  |  
浏览/下载:25/0
  |  
提交时间:2020/12/28
ENERGY LANDSCAPE
SECONDARY RELAXATIONS
MECHANICAL-BEHAVIOR
SUPERCOOLED LIQUIDS
DEFORMATION
DYNAMICS
PLASTICITY
SIGNATURES
DIFFUSION
SAMPL6 host-guest binding affinities and binding poses from spherical-coordinates-biased simulations
期刊论文
OAI收割
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2020, 卷号: 34, 期号: 5, 页码: 589-600
作者:
Sun, Zhaoxi
;
He, Qiaole
;
Li, Xiao
;
Zhu, Zhengdan
  |  
收藏
  |  
浏览/下载:30/0
  |  
提交时间:2020/07/01
Free energy calculation
Binding pose
Binding affinity
Spherical coordinates
SAMPL6
Revealing the Positive Binding Cooperativity Mechanism between the Orthosteric and the Allosteric Antagonists of CCR2 by Metadynamics and Gaussian Accelerated Molecular Dynamics Simulations
期刊论文
OAI收割
ACS CHEMICAL NEUROSCIENCE, 2020, 卷号: 11, 期号: 4, 页码: 628-637
作者:
An, Xiaoli
;
Bai, Qifeng
;
Bing, Zhitong
;
Liu, Hongli
;
Zhang, Qianqian
  |  
收藏
  |  
浏览/下载:16/0
  |  
提交时间:2022/01/18
CC chemokine receptor 2
orthosteric antagonist
allosteric antagonist
binding cooperativity
metadynamics simulation
Gaussian accelerated MD simulation
Enhanced sampling in molecular dynamics
期刊论文
OAI收割
JOURNAL OF CHEMICAL PHYSICS, 2019, 卷号: 151, 期号: 7, 页码: 9
作者:
Yang, Yi Isaac
;
Shao, Qiang
;
Zhang, Jun
;
Yang, Lijiang
;
Gao, Yi Qin
  |  
收藏
  |  
浏览/下载:12/0
  |  
提交时间:2020/07/01