中国科学院机构知识库网格
Chinese Academy of Sciences Institutional Repositories Grid
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昆明植物研究所 [11]
新疆理化技术研究所 [8]
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期刊论文 [84]
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Single-sequence protein structure prediction by integrating protein language models
期刊论文
OAI收割
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2024, 卷号: 121, 期号: 13, 页码: 7
作者:
Jing, Xiaoyang
;
Wu, Fandi
;
Luo, Xiao
;
Xu, Jinbo
  |  
收藏
  |  
浏览/下载:16/0
  |  
提交时间:2024/05/20
protein structure prediction
protein language model
single-sequence protein structure rediction
antibody structure prediction
single mutation effect
Comparative Analysis and Characterization of Ten Complete Chloroplast Genomes of Eremurus Species (Asphodelaceae)
期刊论文
OAI收割
FORESTS, 2023, 卷号: 14, 期号: 9, 页码: 1709
作者:
Makhmudjanov,Dilmurod
;
Abdullaev,Davlatali
;
Juramurodov,Inom
;
Tuychiev,Shakhzodbek
;
Yusupov,Ziyoviddin
  |  
收藏
  |  
浏览/下载:18/0
  |  
提交时间:2024/05/09
Eremurus
chloroplast genome
codon usage
comparative analysis
phylogeny
protein-coding genes
MULTIPLE SEQUENCE ALIGNMENT
PHYLOGENETIC ANALYSIS
GENE-EXPRESSION
TRNL-F
SYSTEMATICS
EVOLUTION
INTRON
TOOL
A de novo evolved gene contributes to rice grain shape difference between indica and japonica
期刊论文
OAI收割
NATURE COMMUNICATIONS, 2023, 卷号: 14, 期号: 1, 页码: 5906
作者:
Chen,Rujia
;
Xiao,Ning
;
Lu,Yue
;
Tao,Tianyun
;
Huang,Qianfeng
  |  
收藏
  |  
浏览/下载:15/0
  |  
提交时间:2024/05/09
NATURAL VARIATION
ORIGIN
SIZE
PROTEIN
GENOME
ASSOCIATION
PREDICTION
DIVERSITY
SEQUENCE
QUALITY
Progress, challenge and prospect of plant plastome annotation
期刊论文
OAI收割
FRONTIERS IN PLANT SCIENCE, 2023, 卷号: 14, 页码: 1166140
作者:
Qu,Xiao-Jian
;
Zou,Dan
;
Zhang,Rui-Yu
;
Stull,Gregory W.
;
Yi,Ting-Shuang
  |  
收藏
  |  
浏览/下载:7/0
  |  
提交时间:2024/05/09
annotation standards
chloroplast genome
plastome
protein structure
pseudogenes
RNA-editing genes
MITOCHONDRIAL GENES
RNA
GENOME
SEQUENCE
CHLOROPLASTS
TRANSLATION
First comparative analysis of complete chloroplast genomes among six Hedysarum (Fabaceae) species
期刊论文
OAI收割
FRONTIERS IN PLANT SCIENCE, 2023, 卷号: 14, 页码: 1211247
作者:
Juramurodov,Inom
;
Makhmudjanov,Dilmurod
;
Yusupov,Ziyoviddin
;
Tojibaev,Komiljon
  |  
收藏
  |  
浏览/下载:10/0
  |  
提交时间:2024/05/09
Hedysarum
chloroplast genome
comparative analysis
phylogeny
protein-coding genes
MAXIMUM-LIKELIHOOD
GENE-EXPRESSION
TRNL-F
SEQUENCE
MATK
ORGANIZATION
SYSTEMATICS
PHYLOGENY
INTRON
NRDNA
Genome-wide analysis of the B3 transcription factors reveals that RcABI3/VP1 subfamily plays important roles in seed development and oil storage in castor bean (Ricinus communis)
期刊论文
OAI收割
PLANT DIVERSITY, 2022, 卷号: 44, 期号: 2, 页码: 201-212
作者:
Wang, Wen-Bo
;
Ao, Tao
;
Zhang, Yan-Yu
;
Wu, Di
;
Xu, Wei
  |  
收藏
  |  
浏览/下载:7/0
  |  
提交时间:2024/04/30
B3 transcription factor
Castor bean
Gene expression
ABI3
VP1 subfamily
Seed development
Seed oil
EMBRYO DEVELOPMENT
LEAFY COTYLEDON2
ARABIDOPSIS RAV1
DOMAIN
MATURATION
PROTEIN
GENES
REGULATOR
SEQUENCE
GERMINATION
COMTOP: Protein Residue-Residue Contact Prediction through Mixed Integer Linear Optimization
期刊论文
OAI收割
MEMBRANES, 2021, 卷号: 11, 期号: 7, 页码: 21
作者:
Reza, Md Selim
;
Zhang, Huiling
;
Hossain, Md Tofazzal
;
Jin, Langxi
;
Feng, Shengzhong
  |  
收藏
  |  
浏览/下载:43/0
  |  
提交时间:2021/12/01
protein residue-residue contact
contact prediction
mixed integer linear programming
machine learning
protein sequence
Draft genome of the herbaceous bamboo Raddia distichophylla
期刊论文
OAI收割
G3-GENES GENOMES GENETICS, 2021, 卷号: 11, 期号: 2, 页码: jkaa049
作者:
Li,Wei
;
Shi,Cong
;
Li,Kui
;
Zhang,Qun-Jie
;
Tong,Yan
  |  
收藏
  |  
浏览/下载:18/0
  |  
提交时间:2022/04/02
bamboos
Raddia distichophylla
whole-genome sequencing
DE-NOVO IDENTIFICATION
SSR-MARKERS
SEQUENCE
RNA
ALIGNMENT
POACEAE
ANNOTATION
PROGRAM
PROTEIN
PLANTS
Comprehensive genomic analysis and expression profiling of cysteine-rich polycomb-like transcription factor gene family in tea tree
期刊论文
OAI收割
HORTICULTURAL PLANT JOURNAL, 2021, 卷号: 7, 期号: 5, 页码: 469-478
作者:
Nan,Hong
;
Lin,Yanglei
;
Wang,Xinghua
;
Gao,Lizhi
  |  
收藏
  |  
浏览/下载:34/0
  |  
提交时间:2022/04/02
Camellia sinensis
CPP transcription factor
Genome-wide analysis
Gene expression profiling
WIDE IDENTIFICATION
CUCUMIS-SATIVUS
PROTEIN
EVOLUTION
SEQUENCE
ARABIDOPSIS
INSIGHTS
TSO1
EXPANSION
DOMAIN
RaacLogo: a new sequence logo generator by using reduced amino acid clusters
期刊论文
OAI收割
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 3
作者:
Zheng, Lei
;
Liu, Dongyang
;
Yang, Wuritu
;
Yang, Lei
;
Zuo, Yongchun
  |  
收藏
  |  
浏览/下载:15/0
  |  
提交时间:2023/02/24
sequence logo
reduced amino acid alphabets
protein design
web server