中国科学院机构知识库网格
Chinese Academy of Sciences Institutional Repositories Grid
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计算技术研究所 [8]
理论物理研究所 [6]
数学与系统科学研究院 [2]
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OAI收割 [21]
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期刊论文 [23]
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2024 [1]
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2018 [3]
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Single-sequence protein structure prediction by integrating protein language models
期刊论文
OAI收割
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2024, 卷号: 121, 期号: 13, 页码: 7
作者:
Jing, Xiaoyang
;
Wu, Fandi
;
Luo, Xiao
;
Xu, Jinbo
  |  
收藏
  |  
浏览/下载:14/0
  |  
提交时间:2024/05/20
protein structure prediction
protein language model
single-sequence protein structure rediction
antibody structure prediction
single mutation effect
SASA-Net: A Spatial-Aware Self-Attention Mechanism for Building Protein 3D Structure Directly From Inter- Residue Distances
期刊论文
OAI收割
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3482-3488
作者:
Gong, Tiansu
;
Ju, Fusong
;
Sun, Shiwei
;
Bu, Dongbo
  |  
收藏
  |  
浏览/下载:2/0
  |  
提交时间:2024/05/20
Deep learning
protein structure prediction
Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms
期刊论文
OAI收割
GENOMICS PROTEOMICS & BIOINFORMATICS, 2023, 卷号: 21, 期号: 5, 页码: 913-925
作者:
Huang, Bin
;
Kong, Lupeng
;
Wang, Chao
;
Ju, Fusong
;
Zhang, Qi
  |  
收藏
  |  
浏览/下载:13/0
  |  
提交时间:2024/05/20
Protein folding
Protein structure prediction
Deep learning
Transformer
Language model
AlphaFold2 versus experimental structures: evaluation on G protein-coupled receptors
期刊论文
OAI收割
ACTA PHARMACOLOGICA SINICA, 2022, 页码: 7
作者:
He, Xin-heng
;
You, Chong-zhao
;
Jiang, Hua-liang
;
Jiang, Yi
;
Xu, H. Eric
  |  
收藏
  |  
浏览/下载:30/0
  |  
提交时间:2022/08/16
G protein-coupled receptors
AlphaFold2
protein structure prediction
drug design
structural biology
ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs
期刊论文
OAI收割
JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14
作者:
Kong, Lupeng
;
Ju, Fusong
;
Zheng, Wei-mou
;
Zhu, Jianwei
;
Sun, Shiwei
  |  
收藏
  |  
浏览/下载:33/0
  |  
提交时间:2022/12/07
deep learning and protein threading
protein alignment
protein structure prediction
FALCON2: a web server for high-quality prediction of protein tertiary structures
期刊论文
OAI收割
BMC BIOINFORMATICS, 2021, 卷号: 22, 期号: 1, 页码: 14
作者:
Kong, Lupeng
;
Ju, Fusong
;
Zhang, Haicang
;
Sun, Shiwei
;
Bu, Dongbo
  |  
收藏
  |  
浏览/下载:48/0
  |  
提交时间:2021/12/01
Protein structure prediction
Template-based modeling
Ab initio prediction
Protein structure prediction web service
Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling
期刊论文
OAI收割
BMC BIOINFORMATICS, 2019, 卷号: 20, 页码: 10
作者:
Zhang, Haicang
;
Wang, Chao
;
Bu, Dongbo
;
Zheng, Wei-Mou
;
Sun, Shiwei
  |  
收藏
  |  
浏览/下载:90/0
  |  
提交时间:2019/08/16
Protein structure prediction
Energy function
Attraction-basin
Reverse Monte Carlo sampling
Monte Carlo search
Linear program
Spectroscopic study of conformation changes of bovine serum albumin in aqueous environment
期刊论文
OAI收割
CHINESE CHEMICAL LETTERS, 2019, 卷号: 30, 期号: 6, 页码: 1302-1306
作者:
Guo, Chune
;
Guo, Xiaomi
;
Chu, Wubo
;
Jiang, Nan
;
Li, He
  |  
收藏
  |  
浏览/下载:80/0
  |  
提交时间:2019/12/18
SECONDARY STRUCTURE PREDICTION
PROTEIN CONFORMATIONS
INFRARED SPECTRA
BINDING
IDENTIFICATION
STABILITY
Correlation-compressed direct-coupling analysis
期刊论文
OAI收割
PHYSICAL REVIEW E, 2018, 卷号: 98, 期号: 3, 页码: 32407
作者:
Gao, CY
  |  
收藏
  |  
浏览/下载:208/0
  |  
提交时间:2018/12/27
STRUCTURE PREDICTION
PROTEIN-STRUCTURE
CONTACTS
IDENTIFICATION
MODEL
SEQUENCES
FAMILIES
HUMANS
Template-based and free modeling of I-TASSER and QUARK pipelines using predicted contact maps in CASP12
期刊论文
OAI收割
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2018, 卷号: 86, 页码: 136-151
作者:
Wang, YT
;
Zhang, CX
;
Mortuza, SM
;
He, BJ
;
Zhang, Y
  |  
收藏
  |  
浏览/下载:90/0
  |  
提交时间:2018/12/27
PROTEIN-STRUCTURE PREDICTION
RESIDUE CONTACTS
SEQUENCE
ALIGNMENTS
ACCURACY
NETWORKS
ROLL