中国科学院机构知识库网格
Chinese Academy of Sciences Institutional Repositories Grid
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计算技术研究所 [11]
上海药物研究所 [9]
理论物理研究所 [7]
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期刊论文 [62]
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Single-sequence protein structure prediction by integrating protein language models
期刊论文
OAI收割
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2024, 卷号: 121, 期号: 13, 页码: 7
作者:
Jing, Xiaoyang
;
Wu, Fandi
;
Luo, Xiao
;
Xu, Jinbo
  |  
收藏
  |  
浏览/下载:16/0
  |  
提交时间:2024/05/20
protein structure prediction
protein language model
single-sequence protein structure rediction
antibody structure prediction
single mutation effect
SASA-Net: A Spatial-Aware Self-Attention Mechanism for Building Protein 3D Structure Directly From Inter- Residue Distances
期刊论文
OAI收割
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3482-3488
作者:
Gong, Tiansu
;
Ju, Fusong
;
Sun, Shiwei
;
Bu, Dongbo
  |  
收藏
  |  
浏览/下载:3/0
  |  
提交时间:2024/05/20
Deep learning
protein structure prediction
Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms
期刊论文
OAI收割
GENOMICS PROTEOMICS & BIOINFORMATICS, 2023, 卷号: 21, 期号: 5, 页码: 913-925
作者:
Huang, Bin
;
Kong, Lupeng
;
Wang, Chao
;
Ju, Fusong
;
Zhang, Qi
  |  
收藏
  |  
浏览/下载:15/0
  |  
提交时间:2024/05/20
Protein folding
Protein structure prediction
Deep learning
Transformer
Language model
A de novo evolved gene contributes to rice grain shape difference between indica and japonica
期刊论文
OAI收割
NATURE COMMUNICATIONS, 2023, 卷号: 14, 期号: 1, 页码: 5906
作者:
Chen,Rujia
;
Xiao,Ning
;
Lu,Yue
;
Tao,Tianyun
;
Huang,Qianfeng
  |  
收藏
  |  
浏览/下载:16/0
  |  
提交时间:2024/05/09
NATURAL VARIATION
ORIGIN
SIZE
PROTEIN
GENOME
ASSOCIATION
PREDICTION
DIVERSITY
SEQUENCE
QUALITY
AlphaFold2 versus experimental structures: evaluation on G protein-coupled receptors
期刊论文
OAI收割
ACTA PHARMACOLOGICA SINICA, 2022, 页码: 7
作者:
He, Xin-heng
;
You, Chong-zhao
;
Jiang, Hua-liang
;
Jiang, Yi
;
Xu, H. Eric
  |  
收藏
  |  
浏览/下载:31/0
  |  
提交时间:2022/08/16
G protein-coupled receptors
AlphaFold2
protein structure prediction
drug design
structural biology
Organochlorine contamination enriches virus-encoded metabolism and pesticide degradation associated auxiliary genes in soil microbiomes
期刊论文
OAI收割
ISME JOURNAL, 2022, 卷号: 16, 期号: 5, 页码: 1397-1408
作者:
Zheng, Xiaoxuan
;
Jahn, Martin T.
;
Sun, Mingming
;
Friman, Ville-Petri
;
Balcazar, Jose Luis
  |  
收藏
  |  
浏览/下载:13/0
  |  
提交时间:2022/11/09
ORGANIC POLLUTANTS
RESISTANCE GENES
PROTEIN
BACTERIA
ENZYMES
DIVERSE
BACTERIOPHAGES
ECOSYSTEMS
PREDICTION
ALIGNMENT
An inductive graph neural network model for compound-protein interaction prediction based on a homogeneous graph
期刊论文
OAI收割
BRIEFINGS IN BIOINFORMATICS, 2022, 页码: 13
作者:
Wan, Xiaozhe
;
Wu, Xiaolong
;
Wang, Dingyan
;
Tan, Xiaoqin
;
Liu, Xiaohong
  |  
收藏
  |  
浏览/下载:47/0
  |  
提交时间:2022/06/15
compound-protein interaction prediction
homogeneous graph
end-to-end learning
inductive graph neural network
ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs
期刊论文
OAI收割
JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14
作者:
Kong, Lupeng
;
Ju, Fusong
;
Zheng, Wei-mou
;
Zhu, Jianwei
;
Sun, Shiwei
  |  
收藏
  |  
浏览/下载:37/0
  |  
提交时间:2022/12/07
deep learning and protein threading
protein alignment
protein structure prediction
A Distributed Framework for Large-scale Protein-protein Interaction Data Analysis and Prediction Using MapReduce
期刊论文
OAI收割
IEEE/CAA Journal of Automatica Sinica, 2022, 卷号: 9, 期号: 1, 页码: 160-172
作者:
Lun Hu
;
Shicheng Yang
;
Xin Luo
;
Huaqiang Yuan
;
Khaled Sedraoui
  |  
收藏
  |  
浏览/下载:91/0
  |  
提交时间:2021/11/03
Distributed computing
large-scale prediction machine learning
MapReduce
protein-protein interaction (PPI)
FALCON2: a web server for high-quality prediction of protein tertiary structures
期刊论文
OAI收割
BMC BIOINFORMATICS, 2021, 卷号: 22, 期号: 1, 页码: 14
作者:
Kong, Lupeng
;
Ju, Fusong
;
Zhang, Haicang
;
Sun, Shiwei
  |  
收藏
  |  
浏览/下载:50/0
  |  
提交时间:2021/12/01
Protein structure prediction
Template-based modeling
Ab initio prediction
Protein structure prediction web service