中国科学院机构知识库网格
Chinese Academy of Sciences Institutional Repositories Grid
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CAS IR Grid
机构
上海药物研究所 [3]
长春应用化学研究所 [3]
力学研究所 [2]
计算技术研究所 [1]
中国科学院大学 [1]
生态环境研究中心 [1]
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OAI收割 [10]
iSwitch采集 [1]
内容类型
期刊论文 [11]
发表日期
2024 [1]
2023 [1]
2021 [1]
2018 [2]
2013 [2]
2010 [1]
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学科主题
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Interaction-Based Inductive Bias in Graph Neural Networks: Enhancing Protein-Ligand Binding Affinity Predictions From 3D Structures
期刊论文
OAI收割
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2024, 卷号: 46, 期号: 12, 页码: 8191-8208
作者:
Yang, Ziduo
;
Zhong, Weihe
;
Lv, Qiujie
;
Dong, Tiejun
;
Chen, Guanxing
  |  
收藏
  |  
浏览/下载:9/0
  |  
提交时间:2025/01/14
Proteins
Programmable logic arrays
Three-dimensional displays
Predictive models
Graph neural networks
Data models
Convolution
Protein-ligand binding affinity
graph neural networks
inductive bias
drug-target interaction
structure-based virtual screening
Two dimensional measurements of receptor ligand interactions
期刊论文
OAI收割
FRONTIERS IN MOLECULAR BIOSCIENCES, 2023, 卷号: 10, 页码: 1154074
作者:
Zheng SJ(郑松杰)
;
Zou M(邹敏)
;
Shao YF(邵颖峰)
;
Wu, Huaping
;
Wu, Helong
  |  
收藏
  |  
浏览/下载:10/0
  |  
提交时间:2023/04/20
receptor ligand interaction
binding kinetics
kinetic on rate
kinetic off rate
binding affinity
two dimensional measuring methods
CSConv2d: A 2-D Structural Convolution Neural Network with a Channel and Spatial Attention Mechanism for Protein-Ligand Binding Affinity Prediction
期刊论文
OAI收割
BIOMOLECULES, 2021, 卷号: 11, 期号: 5, 页码: 9
作者:
Wang, Xun
;
Liu, Dayan
;
Zhu, Jinfu
;
Rodriguez-Paton, Alfonso
;
Song, Tao
  |  
收藏
  |  
浏览/下载:61/0
  |  
提交时间:2021/12/01
protein-ligand binding affinity
2-D structural CNN
spatial attention mechanism
Direct fluorescence anisotropy approach for aflatoxin B1 detection and affinity binding study by using single tetramethylrhodamine labeled aptamer
期刊论文
OAI收割
TALANTA, 2018, 卷号: 189, 页码: 442-450
作者:
Sun, Linlin
;
Zhao, Qiang
  |  
收藏
  |  
浏览/下载:223/0
  |  
提交时间:2019/06/20
Aptamer
Fluorescence anisotropy
Fluorescence polarization
Aflatoxin
Affinity ligand
Binding affinity
Recent Trends and Applications of Molecular Modeling in GPCR-Ligand Recognition and Structure-Based Drug Design
期刊论文
OAI收割
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2018, 卷号: 19, 期号: 7
作者:
  |  
收藏
  |  
浏览/下载:26/0
  |  
提交时间:2019/01/08
GPCR
receptor-ligand recognition
drug design
molecular modeling
molecular dynamics
docking
binding affinity
binding pathway
Rational Drug Design: The Search for Ras Protein Hydrolysis Intermediate Conformation Inhibitors with Both Affinity and Specificity
期刊论文
OAI收割
current pharmaceutical design, 2013, 卷号: 19, 期号: 12, 页码: 2246-2258
Zheng XL
;
Liu ZJ
;
Li D
;
Wang EK
;
Wang J
收藏
  |  
浏览/下载:28/0
  |  
提交时间:2014/04/20
EMPIRICAL SCORING FUNCTIONS
SMALL-MOLECULE INHIBITOR
SELF-ORGANIZING MAP
MARKETED ORAL-DRUGS
LIGAND INTERACTIONS
FLEXIBLE DOCKING
AUTOMATED DOCKING
BINDING-AFFINITY
GENETIC ALGORITHM
COMPOUND COLLECTIONS
Optimizing Scoring Function of Protein-Nucleic Acid Interactions with Both Affinity and Specificity
期刊论文
OAI收割
plos one, 2013, 卷号: 8, 期号: 9, 页码: 文献号: e74443
Yan ZQ
;
Wang J
收藏
  |  
浏览/下载:22/0
  |  
提交时间:2014/04/15
KNOWLEDGE-BASED POTENTIALS
COMPUTATIONAL REDESIGN
DOCKING BENCHMARK
MEAN FORCE
MOLECULAR RECOGNITION
BINDING-AFFINITY
DNA INTERACTIONS
ENERGY FUNCTION
LIGAND-BINDING
DATA-BANK
Applications of Ultrafiltration Mass Spectrometry in the Studies on Interaction Between Small Drug Molecule and Biological Target
期刊论文
OAI收割
progress in chemistry, 2010, 卷号: 22, 期号: 11, 页码: 2207-2214
Zhou H
;
Song FR
;
Liu ZQ
;
Liu SY
收藏
  |  
浏览/下载:21/0
  |  
提交时间:2012/04/25
SCREENING COMBINATORIAL LIBRARIES
PULSED ULTRAFILTRATION
NONCOVALENT COMPLEXES
ESTROGENIC ACTIVITY
ESI-MS
BINDING
AFFINITY
DNA
INHIBITORS
LIGAND
Two-Dimensional Kinetics Of Beta(2)-Integrin And Icam-1 Bindings Between Neutrophils And Melanoma Cells In A Shear Flow
期刊论文
OAI收割
American Journal of Physiology-Cell Physiology, 2008, 页码: C743-C753
作者:
Liang SL
;
Fu ZL(傅长亮)
;
Wagner D
;
Guo HG
;
Zhan DY
收藏
  |  
浏览/下载:901/60
  |  
提交时间:2009/08/03
Heterotypic Cell Aggregation
Adhesion Molecule
Leukocyte
Tumor Cell
Reverse Rate
Binding Affinity
Probabilistic Model
Polymorpho-Nuclear Neutrophils
Intercellular Adhesion Molecule-1
Intercellular-Adhesion Molecule-1
Ligand-Mediated Adhesion
Hydrodynamic Shear
L-Selectin
Malignant-Melanoma
Dynamic Regulation
Variant Isoforms
Stable Adhesion
Latex Spheres
P-Selectin
The conserved residue phe273(282) of ppar alpha(gamma), beyond the ligand-binding site, functions in binding affinity through solvation effect
期刊论文
iSwitch采集
Biochimie, 2005, 卷号: 87, 期号: 6, 页码: 539-550
作者:
Yue, LD
;
Ye, F
;
Xu, XY
;
Shen, JH
收藏
  |  
浏览/下载:13/0
  |  
提交时间:2019/05/10
Peroxisome proliferator-activated receptor (ppar)
Mutation
Ligand-binding affinity
Solvation effect
Molecular dynamics
Surface plamon resonance (spr)
Transcriptional activation