中国科学院机构知识库网格
Chinese Academy of Sciences Institutional Repositories Grid
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上海药物研究所 [42]
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期刊论文 [83]
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Interaction-Based Inductive Bias in Graph Neural Networks: Enhancing Protein-Ligand Binding Affinity Predictions From 3D Structures
期刊论文
OAI收割
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2024, 卷号: 46, 期号: 12, 页码: 8191-8208
作者:
Yang, Ziduo
;
Zhong, Weihe
;
Lv, Qiujie
;
Dong, Tiejun
;
Chen, Guanxing
  |  
收藏
  |  
浏览/下载:7/0
  |  
提交时间:2025/01/14
Proteins
Programmable logic arrays
Three-dimensional displays
Predictive models
Graph neural networks
Data models
Convolution
Protein-ligand binding affinity
graph neural networks
inductive bias
drug-target interaction
structure-based virtual screening
TRIP13-a potential drug target in cancer pharmacotherapy
期刊论文
OAI收割
BIOORGANIC CHEMISTRY, 2024, 卷号: 151, 页码: 11
作者:
Bunu, Samuel Jacob
;
Cai, Haiyan
;
Wu, Leyun
;
Zhang, Hui
;
Zhou, Zhaoyin
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收藏
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浏览/下载:11/0
  |  
提交时间:2024/09/26
AAA plus ATPase
TRIP13
Cancer
Drug target
Small-molecule inhibitors
In silico off-target profiling for enhanced drug safety assessment
期刊论文
OAI收割
ACTA PHARMACEUTICA SINICA B, 2024, 卷号: 14, 期号: 7, 页码: 2927-2941
作者:
Liu, Jin
;
Gui, Yike
;
Rao, Jingxin
;
Sun, Jingjing
;
Wang, Gang
  |  
收藏
  |  
浏览/下载:10/0
  |  
提交时间:2024/08/22
Drug safety
Off-target prediction
Adverse drug reactions
Toxicity
Molecular representation
Artificial intelligence
Substrate and Functional Diversity of Protein Lysine Post-translational Modifications
期刊论文
OAI收割
GENOMICS PROTEOMICS & BIOINFORMATICS, 2024, 卷号: 22, 期号: 1, 页码: 21
作者:
Hao, Bingbing
;
Chen, Kaifeng
;
Zhai, Linhui
;
Liu, Muyin
;
Liu, Bin
  |  
收藏
  |  
浏览/下载:4/0
  |  
提交时间:2024/12/16
Protein lysine PTM
Regulatory enzyme
PTM crosstalk
Drug target
Acylation
Eliminating drug target interference with specific antibody or its F(ab′)
2
fragment in the bridging immunogenicity assay
期刊论文
OAI收割
BIOANALYSIS, 2024, 页码: 14
作者:
Deng, Xiaojie
;
Hou, Yingying
;
Yuan, Wenyi
;
Yang, Hongzhou
;
Guo, Ruowen
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收藏
  |  
浏览/下载:295/0
  |  
提交时间:2024/04/09
anti-drug antibody
IgE
immunogenicity
mitigation
target interference
A proteomic landscape of pharmacologic perturbations for functional relevance
期刊论文
OAI收割
JOURNAL OF PHARMACEUTICAL ANALYSIS, 2024, 卷号: 14, 期号: 1, 页码: 128-139
作者:
Liu, Zhiwei
;
Jiang, Shangwen
;
Hao, Bingbing
;
Xie, Shuyu
;
Liu, Yingluo
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收藏
  |  
浏览/下载:23/0
  |  
提交时间:2024/04/09
Proteomics
Drug
Perturbation
Drug target
Drug combination
Structural insights into the interaction of three Y- shaped ligands with PI3Kα
期刊论文
OAI收割
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2023, 卷号: 120, 期号: 34, 页码: 9
作者:
Zhou, Qingtong
;
Liu, Xiao
;
Neri, Dario
;
Li, Wenxin
;
Favalli, Nicholas
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收藏
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浏览/下载:24/0
  |  
提交时间:2023/12/08
phosphoinositide 3-kinase
drug target
ligand
binding pocket
chemical scaffold
ETCM v2.0: An update with comprehensive resource and rich annotations for traditional Chinese medicine
期刊论文
OAI收割
ACTA PHARMACEUTICA SINICA B, 2023, 卷号: 13, 期号: 6, 页码: 2559-2571
作者:
Zhang, Yanqiong
;
Li, Xin
;
Shi, Yulong
;
Chen, Tong
;
Xu, Zhijian
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收藏
  |  
浏览/下载:57/0
  |  
提交时间:2023/10/17
Traditional Chinese medicine
Database
Target identification
Network visualization
New drug research and development
Molecular mechanism
Quality marker
Drug repurposing
Proteomic characterization of post-translational modifications in drug discovery
期刊论文
OAI收割
ACTA PHARMACOLOGICA SINICA, 2022, 页码: 18
作者:
Zhai, Lin-hui
;
Chen, Kai-feng
;
Hao, Bing-bing
;
Tan, Min-jia
  |  
收藏
  |  
浏览/下载:25/0
  |  
提交时间:2023/04/10
proteomics
protein post-translational modification
drug target
off-target
drug mechanism
precision medicine
Conserved protein targets for developing pan-coronavirus drugs based on sequence and 3D structure similarity analyses
期刊论文
OAI收割
COMPUTERS IN BIOLOGY AND MEDICINE, 2022, 卷号: 145, 页码: 105455
作者:
Ma, Minfei
;
Yang, Yanqing
;
Wu, Leyun
;
Zhou, Liping
;
Shi, Yulong
  |  
收藏
  |  
浏览/下载:32/0
  |  
提交时间:2024/03/21
Pharmaceutical informatics
Drug design
Target discovery
Medicinal chemistry
Broad-spectrum drugs